SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene205780

Length: 505 nt

UniGene Fasta

>sp_v3.0_unigene205780
CAGGCCCAATGACATCTATTCCCACGGTTTGGAATTACAAGTAATTGCGCGTATAGTAAATTTCTATTGCCTTAGCGGTAACTGTGAAGGCTACTCCTGACAATGTCTCACGCACTCAACACGCTTTGTGTCTCTGTATCTTAACTTCTTCTCATCCAAAAATTGTCACTTCCATCTATTTCCGTTCGTCAAATCGCGAGTTCAATTCCGCTGACCATCACATTTCACGAGCACGTCCTGAGATCGAATCCCAGATACCCCGACATGGCTAGACTCTCCACGAATCAGAACGGTCACAGCAGACCCGAAAACCGCTCACTGAAGTCGCGGCAGTTCAAGGGAATTCGATTGAGAAAATGGGGGACATGGGTTTCGGAAATTCGAATGCCCAAATCCACTGGAAGAATTTGGCTTGGCTCCTACGACATGCCGGAAAAGGCTGCCCGCGCCTACGATTTTGCTGCGTATTGCCTGAGAGGATCGGAAGCCAAGCTCAATTTTCCCC

Ace file of the UniGene sp_v3.0_unigene205780

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dehydration-responsive element binding protein 3 n=1 Tax=Glycine max RepID=Q2VEU3_SOYBN	-	-	2.0e-19	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	AP2/ERF domain-containing transcription factor	-	-	1.4013e-45	-

Source	Gene names
Sma3	AP22.2; At1g01250; At1g19210; At1g64380; At1g74930; At2g23340; At3g50260; At4g06746; At4g31060; At4g36900; At5g21960; At5g67190; B1172G12.12; B1172G12.14; B1172G12.5; B1172G12.8; C-EF1; C-EF2; C-EF3; C-EF4; C-EF5; C-EF8; C7A10.460; DREB; DREB18; DREB32; D

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3		IPR001476	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Chaperonin Cpn10, conserved site	IPR018369	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G19210.1	Integrase-type DNA-binding superfamily protein chr1:6626973-6627530 REVERSE LENGTH=185	6.0e-25	72%
RefSeq	Arabidopsis thaliana	NP_173355.3	ethylene-responsive transcription factor ERF017 [Arabidopsis thaliana]	8.0e-25	72%
RefSeq	Populus trichocarpa	XP_002308508.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	8.0e-25	74%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQM1

Fln msg: Distance to subject end: 97 aas, your sequence is shorter than subject: 80 - 177

Fln protein: MARLSTNQNGHSRPENRSLKSRQFKGIRLRKWGTWVSEIRMPKSTGRIWLGSYDMPEKAARAYDFAAYCLRGSEAKLNFP

Protein Length: 81

Fln nts: CAGGCCCAATGACATCTATTCCCACGGTTTGGAATTACAAGTAATTGCGCGTATAGTAAATTTCTATTGCCTTAGCGGTAACTGTGAAGGCTACTCCTGACAATGTCTCACGCACTCAACACGCTTTGTGTCTCTGTATCTTAACTTCTTCTCATCCAAAAATTGTCACTTCCATCTATTTCCGTTCGTCAAATCGCGAGTTCAATTCCGCTGACCATCACATTTCACGAGCACGTCCTGAGATCGAATCCCAGATACCCCGAC_-_ATGGCTAGACTCTCCACGAATCAGAACGGTCACAGCAGACCCGAAAACCGCTCACTGAAGTCGCGGCAGTTCAAGGGAATTCGATTGAGAAAATGGGGGACATGGGTTTCGGAAATTCGAATGCCCAAATCCACTGGAAGAATTTGGCTTGGCTCCTACGACATGCCGGAAAAGGCTGCCCGCGCCTACGATTTTGCTGCGTATTGCCTGAGAGGATCGGAAGCCAAGCTCAATTTTCCCC

Fln Alignment:

AllPine_b_rep_c61497___MARLSTNQNGHSRPENRSLKSRQFKGIRLRKWGTWVSEIRMPKSTGRIWLGSYDMPEKAARAYDFAAYCLRGSEAKLNFP
A9NQM1________________MTKPSPNQNSHSRPETRSLKSRQFKGIRMRKWGKWVSEIRMPYCTGRIWLGSYDTPEKAARAYDFAAFCLRGSKAKLNFP

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
171			33	66	1.0
185	11		88		0.923596
205	75	25			1.0
226			22	77	0.999999
241			75	25	1.0
242	75			25	1.0
257			22	77	0.999999
258	75		25		1.0
262		88		11	0.923776
265		75		25	1.0
270	11	88			0.92373
307		77		22	0.999999
309	87	12			0.992554
319	88		11		0.923564
485	42		57		1.0
489		57	42		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain