SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene205710

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene205710
CATATAAATATGTGTACCTAGCAACGGTGGGGTATGTTATGACAATTACCATGCCACACTGTATAATACTCTACTGGGCATTTGGAGACGAGCTTTTAACGCATTCCAACGCCTTCTCAGTGTTGCCTGCTTCTACCTTCAGAAGCATAGGCTTGGGTTTCATGATTATTCACCAGGCAGTTGCCTTTGGGCTGTACGTGATGCCACTGAACTTCATGTGGG

Ace file of the UniGene sp_v3.0_unigene205710

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	auxin influx carrier-like protein 1 [Momordica charantia]	-	-	3.0e-17	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%

Source	Gene names
Sma3	PHYPADRAFT_132989; pplax5;

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G01240.1	LAX1 like AUXIN RESISTANT 1 chr5:98228-101493 FORWARD LENGTH=488	5.0e-20	49%
RefSeq	Arabidopsis thaliana	NP_974719.1	auxin transporter-like protein 1 [Arabidopsis thaliana]	4.0e-20	49%
RefSeq	Populus trichocarpa	XP_002316226.1	auxin influx carrier component [Populus trichocarpa]	7.0e-21	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKH8

Fln msg: Distance to subject end: 132 aas, your sequence is shorter than subject: 73 - 480

Fln protein: YKYVYLATVGYVMTITMPHCIILYWAFGDELLTHSNAFSVLPASTFRSIGLGFMIIHQAVAFGLYVMPLNFMW

Protein Length: 74

Fln nts: CATATAAATATGTGTACCTAGCAACGGTGGGGTATGTTATGACAATTACCATGCCACACTGTATAATACTCTACTGGGCATTTGGAGACGAGCTTTTAACGCATTCCAACGCCTTCTCAGTGTTGCCTGCTTCTACCTTCAGAAGCATAGGCTTGGGTTTCATGATTATTCACCAGGCAGTTGCCTTTGGGCTGTACGTGATGCCACTGAACTTCATGTGGG

Fln Alignment:

AllPine_b_rep_c60664___YKYVYLATVGYVMTITMPHCIILYWAFGDELLTHSNAFSVLPASTFRSIGLGFMIIHQAVAFGLYVMPLNFMW
B8LKH8________________YKYVYLWTVGYVLTITIPHCIVLYSNFGDELLNHSNALSVLPHSVFRSIALCFMICHQALAFGLYVMPLNFMW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain