SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene205692

Length: 550 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene205692
CTGCTGCGACCGAGTATGACTACTGTTCAAGCTCCTGCTGATTGGAGACTCTGGTGTCGGAAAGTCTTGTCTGTTGCTGCGATTTGCCGACCACACTTACACGGAAAGCTACATTTCCACCATCGGTGTCGACTTCAAGATCCGCACCATCGAGCTGGATGGCAAGACAATCAAGCTGCAGATTTGGGATACCGCTGGCCAGGAGCGCTTCCGCACCATCACTAGCAGTTACTACCGCGGCGCTCACGGTATCATCGTCGTGTACGATGTCACCGACATGGAATCCTTCAACAACGTGAAGCAGTGGCTGAGCGAAATTGAACGCTACGCCAGCGAAAACGTCAACAAGCTGCTGGTGGGCAACAAGTGCGACCTGGTGCAGAAGAAGGCTGTGGATTATGACACCGCCAAGGCTTTCGCGGACGGCTTGGACATTCCTTTCCTGGAGACGTCCGCCAAGAACGCGACAAACGTCGAGAAGGCTTTCTTGACGATGGCGGCTGAGATCAAGAATCGCATCGCGACTCAGCCCACAGCTCAAACAGGAGCC

Ace file of the UniGene sp_v3.0_unigene205692 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rab1/RabD-family small GTPase n=7 Tax=Embryophyta RepID=A9SLS3_PHYPA	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G17530.1	RAB1C, ATRAB1C, ATRABD2C RAB GTPase homolog 1C chr4:9773721-9775424 REVERSE LENGTH=202	84%
RefSeq	Arabidopsis thaliana	NP_193486.1	RAB GTPase homolog 1C [Arabidopsis thaliana]	84%
RefSeq	Populus trichocarpa	XP_002304305.1	predicted protein [Populus trichocarpa]	86%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPH9

Fln msg: Distance to subject end: 19 aas, atg_distance in limit (1-15): atg_distance = 1, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 177 - 202

Fln protein: LLFKLLLIGDSGVGKSCLLLRFADHTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDMESFNNVKQWLSEIERYASENVNKLLVGNKCDLVQKKAVDYDTAKAFADGLDIPFLETSAKNATNVEKAFLTMAAEIKNRIATQPTAQTGA

Protein Length: 178

Fln nts: CTGCTGCGACCGAGT_-_ATGACTACTGTTCAAGCTCCTGCTGATTGGAGACTCTGGTGTCGGAAAGTCTTGTCTGTTGCTGCGATTTGCCGACCACACTTACACGGAAAGCTACATTTCCACCATCGGTGTCGACTTCAAGATCCGCACCATCGAGCTGGATGGCAAGACAATCAAGCTGCAGATTTGGGATACCGCTGGCCAGGAGCGCTTCCGCACCATCACTAGCAGTTACTACCGCGGCGCTCACGGTATCATCGTCGTGTACGATGTCACCGACATGGAATCCTTCAACAACGTGAAGCAGTGGCTGAGCGAAATTGAACGCTACGCCAGCGAAAACGTCAACAAGCTGCTGGTGGGCAACAAGTGCGACCTGGTGCAGAAGAAGGCTGTGGATTATGACACCGCCAAGGCTTTCGCGGACGGCTTGGACATTCCTTTCCTGGAGACGTCCGCCAAGAACGCGACAAACGTCGAGAAGGCTTTCTTGACGATGGCGGCTGAGATCAAGAATCGCATCGCGACTCAGCCCACAGCTCAAACAGGAGCC

Fln Alignment:

AllPine_b_rep_c60636___LFKLLLIGDSGVGKSCLLLRFADHTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDMESFNNVKQWLSEIERYASENVNKLLVGNKCDLVQKKAVDYDTAKAFADGLDIPFLETSAKNATNVEKAFLTMAAEIKNRIATQP
A9NPH9________________LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANRAVDYDTAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain