SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene205691

Length: 508 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene205691
GGAATGAAGATTGAGGCAACACACGCTGCTCTCCTCGATAAGCTTAAGATCAGACCTTTCAGCTACAAGATGAACGTCAAGAAGGTCTACGAGGATGGTTCAATCTTCAACCCAGATGTTCTCGATATTACCAGCGAGGATATCTTGAAGAGATTCAGAACCACCATTAGCAACATGGCTTCAATTTCTCTAGCCTCAGGATTCATCATCAAGCCAGCAGTACCCCATCTTCTCGCTAACGCATTCAAGAACTTGGCTGCTGTTACTTTCGATACTGACTACTCATTCAAGCAAGCCGACAAGATGAAGGAAGCTGCCAAGAATGCCGTCCACGTTGCACCAACTGCCGCCGCAACTACCACTGCTGCTCCCGCTAAAGTTGAGGAGAAGAAGGAAGAGGAGCCAGCTGATGTTGATATGGGAGGTCTCTTCGGAGATGACTATTGAGCTGCATGACTCATTTACCCACAAAAAAGAGGATCTTTGTTGTTTCCCTTTAATAAAATTC

Ace file of the UniGene sp_v3.0_unigene205691 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S acidic ribosomal protein P0 n=6 Tax=Andropogoneae RepID=RLA0_MAIZE	-	-	3.0e-24	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	60S acidic ribosomal protein P0	-	-	4.82e-16	-

Source	Gene names
Sma3	GSVIVT00018228001; GSVIVT00029254001; LOC_Os11g04070; LOC_Os12g03880; Os08g0130500; Os11g0135400; OsI_27702; OsI_34997; OsI_37384; OsJ_25932; OsJ_25933; OsJ_35136; PHYPADRAFT_179848; PHYPADRAFT_180102; POPTRDRAFT_822404; POPTRDRAFT_832583; RCOM_0592410; R

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-
Sma3	ribosome biogenesis	GO:0042254	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10/acidic P0	IPR001790	-	-
Sma3	Ribosomal protein 60S	IPR001813	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G40010.1	Ribosomal protein L10 family protein chr2:16708578-16710448 REVERSE LENGTH=317	1.0e-26	46%
RefSeq	Arabidopsis thaliana	NP_181530.1	60S acidic ribosomal protein P0-1 [Arabidopsis thaliana]	1.0e-26	46%
RefSeq	Populus trichocarpa	XP_002315165.1	predicted protein [Populus trichocarpa]	2.0e-27	48%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9F2

Fln msg: your sequence is shorter than subject: 149 - 266

Fln protein: GMKIEATHAALLDKLKIRPFSYKMNVKKVYEDGSIFNPDVLDITSEDILKRFRTTISNMASISLASGFIIKPAVPHLLANAFKNLAAVTFDTDYSFKQADKMKEAAKNAVHVAPTAAATTTAAPAKVEEKKEEEPADVDMGGLFGDDY*

Protein Length: 150

Fln nts: GGAATGAAGATTGAGGCAACACACGCTGCTCTCCTCGATAAGCTTAAGATCAGACCTTTCAGCTACAAGATGAACGTCAAGAAGGTCTACGAGGATGGTTCAATCTTCAACCCAGATGTTCTCGATATTACCAGCGAGGATATCTTGAAGAGATTCAGAACCACCATTAGCAACATGGCTTCAATTTCTCTAGCCTCAGGATTCATCATCAAGCCAGCAGTACCCCATCTTCTCGCTAACGCATTCAAGAACTTGGCTGCTGTTACTTTCGATACTGACTACTCATTCAAGCAAGCCGACAAGATGAAGGAAGCTGCCAAGAATGCCGTCCACGTTGCACCAACTGCCGCCGCAACTACCACTGCTGCTCCCGCTAAAGTTGAGGAGAAGAAGGAAGAGGAGCCAGCTGATGTTGATATGGGAGGTCTCTTCGGAGATGACTATTGA___GCTGCATGACTCATTTACCCACAAAAAAGAGGATCTTTGTTGTTTCCCTTTAATAAAATTC

Fln Alignment:

AllPine_b_rep_c60634___GMKIEATHAALLDKLKIRPFSYKMNVKKVYEDGSIFNPDVLDITSEDILKRFRTTISNMASISLASGFIIKPAVPHLLANAFKNLAAVTFDTDYSFKQADKMKE
D5A9F2________________GEKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFDPEVLDLTEDDLIEKFAAGISTVTALSLAISYPTIAAVPHAIINGYKNVLAIAIELDYSFPLAEKVKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain