SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene205591

Length: 490 nt

UniGene Fasta

>sp_v3.0_unigene205591
TTCAAGGACCCAGAAGCGGAAGATGCTGGACCGGGTACAAAGGATTATGTACATGTTCGTATACAGCAGAGGAATGGAAGAAAGTGCCTGACTACAATTCAAGGTTATCCAGCTTCAAGGTGATCAAAGGAAGAACGTTTCTCAGTTCCTTATCAATGCTGGTTTGGTGAAGAAAGATAAGATCAAGATTCATGGATTTTAAACTACTTATTTGATGAAGACGTAGATCGGTAAAAAAATGCATTAATGTGCTGTTTTTAGATTTCAAATTGTACTTTTGACAGTACATATGTACTGTTACTACTGTGTTGGTGATCGCCTCATGTATAGGTGGCGGATAAATTATTTTCGTTGTTTTCTTAGGGATTTTAGGGATTTTATTAACGTAAGGAATGTTCTCTCCTGAGTCAAATCGGGTATCATATGTTGTCTGTAAACCTCTGTACTCTTCCAATTATAAATACCAGAAAAACTGCGAAATTATGTTTCC

Ace file of the UniGene sp_v3.0_unigene205591

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative eukaryotic translation initiation factor SUI1 n=1 Tax=Catharanthus roseus RepID=F2VQM9_CATRO	-	-	2.0e-19	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Protein translation factor SUI1 homolog	-	-	1.788e-15	-

Source	Gene names
Sma3	At1g54290; At4g27130; At5g54760; At5g54940; CHLREDRAFT_145043; F20D21.11; F20D21.53; GOS2; GSVIVT00027322001; Os01g0794500; Os05g0498400; OsI_025373; OsI_04056; OsI_20483; OsI_26284; OsJ_03741; OsJ_19073; OsJ_24532; P0010D04.10; P0684C02.19; PHYPADRAFT_17

Source	GOs	Term	Type	Identity
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	translational initiation	GO:0006413	Biological Process	-
Sma3	regulation of translation	GO:0006417	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Translation initiation factor SUI1	IPR001950	-	-
Sma3	Eukaryotic translation initiation factor SUI1	IPR005874	-	-
Sma3	Tyrosyl-DNA phosphodiesterase	IPR010347	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G27130.1	Translation initiation factor SUI1 family protein chr4:13604814-13605525 REVERSE LENGTH=113	1.0e-21	71%
RefSeq	Arabidopsis thaliana	NP_175831.1	protein translation factor SUI1-2 [Arabidopsis thaliana]	2.0e-21	71%
RefSeq	Populus trichocarpa	XP_002316980.1	predicted protein [Populus trichocarpa]	2.0e-21	77%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTS5

Fln msg: Warning!, your query overlaps and the subject is separated, atg_distance in limit (1-15): atg_distance = 14, W2: There is no M at the beginning, your sequence is shorter than subject: 68 - 112

Fln protein: FKDPEAEDAGPGTKDYVHVRIQQRNGRKCLTTIxxxIQLQGDQRKNVSQFLINAGLVKKDKIKIHGF*

Protein Length: 69

Fln nts: TTCAAGGACCCAGAAGCGGAAGATGCTGGACCGGGTACAAAGGATTATGTACATGTTCGTATACAGCAGAGGAATGGAAGAAAGTGCCTGACTACAATTxxxxxxxxxATCCAGCTTCAAGGTGATCAAAGGAAGAACGTTTCTCAGTTCCTTATCAATGCTGGTTTGGTGAAGAAAGATAAGATCAAGATTCATGGATTTTAAACTACTTATTTGATGAAGACGTAGATCGGTAAAAAAATGCATTAATGTGCTGTTTTTAGATTTCAAATTGTACTTTTGACAGTACATATGTACTGTTACTACTGTGTTGGTGATCGCCTCATGTATAGGTGGCGGATAAATTATTTTCGTTGTTTTCTTAGGGATTTTAGGGATTTTATTAACGTAAGGAATGTTCTCTCCTGAGTCAAATCGGGTATCATATGTTGTCTGTAAACCTCTGTACTCTTCCAATTATAAATACCAGAAAAACTGCGAAATTATGTTTCC

Fln Alignment:

AllPine_b_rep_c60461___FKDPEAEDAGPGTKDYVHVRIQQRNGRKCLTTIQGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVIQLQGDQRKNVSQFLINAGLVKKDKIKIHGF
A9NTS5________________FKDSEADDAGPGTKDYVHVRIQQRNGRKCLTTIQGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQIIQLQGDQRKNVSQFLINAGLVKKDKIKIHGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain