SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene205307

Length: 507 nt

UniGene Fasta

>sp_v3.0_unigene205307
AAGACAACGCCACATGTTGAGGACCAACTACTTCGCCGGCCCCGAGAAAGAGCCTCCACCGCAGAGATGACTGACTTCCTTTCCATTTACTAGCAAGGTCGAAATAACCGCCAATACACAGATCACCGTGGGCTTGCCAGCTAATAGCAATAGCAGGATTAGGGTTTCGTTAACCTAAGGACTCTGTGGATGTGACTGGTTTGTTATAAGGTGCGTACAAATTCACAATGGGCCGCGGAAAGATTGAGATCAAGCGGATCGAGAATACTACAAATCGGCTAGTGACTTTCTGCAAGCGCCGAAACGGGTTACTGAAGAAGGCGTATGAATTGTCTGTGCTTTGCGAAGCCGAAGTGGCACTAATCGTCTTTTCAGACCGTGGAAAACTATTCGAATTTGCTAATAAAAGAACTATTAAGAGATATAAGAAGACACAAACGAAGGAGATACGATGCAAACCAATTACACAGTCGAGTGCAGAGTTTTGGCAAAATGACGCTCTAAAAA

Ace file of the UniGene sp_v3.0_unigene205307

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative MADS domain transcription factor GGM3 n=1 Tax=Gnetum gnemon RepID=Q9XGK4_GNEGN	-	-	8.0e-31	71%
FL-Next	tr=MADS box transcription factor; Pinus resinosa (Red pine) (Norway pine).	-	-	0.0	71%
Sma3	AGAMOUS-like protein	-	-	1.614e-33	-

Source	Gene names
Sma3	AG; AG-1; AG-2; AG1; AG1-T2; AG2; AGAMOUS; AGL; AGL1; AGL11; AGL2; AGL31; AGL39; AGL5; AGL9; AGa; AGb; AVAG1; AVAG2; ApMADS2; At2g42830; At3g58780; At4g09960; At4g18960; BnSHP1; CAG1; CAG2; CAG3; CMB; CMB1; CUM1; CUM10; CitMADS1; CitMADS6; DP; F13C5.130;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	indeterminate inflorescence morphogenesis	GO:0048283	Biological Process	-
Sma3	carpel development	GO:0048440	Biological Process	-
Sma3	stamen development	GO:0048443	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-
Sma3	maintenance of floral organ identity	GO:0048497	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Transcription factor, K-box	IPR002487	-	-
Sma3	Protein of unknown function DUF538	IPR007493	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G42830.2	SHP2, AGL5 K-box region and MADS-box transcription factor family protein chr2:17820602-17823806 FORWARD LENGTH=248	7.0e-35	63%
RefSeq	Arabidopsis thaliana	NP_565986.1	agamous-like MADS-box protein AGL5 [Arabidopsis thaliana]	9.0e-35	63%
RefSeq	Populus trichocarpa	XP_002325531.1	predicted protein [Populus trichocarpa]	3.0e-36	66%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9ZTY6

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 93 - 222

Fln protein: MGRGKIEIKRIENTTNRLVTFCKRRNGLLKKAYELSVLCEAEVALIVFSDRGKLFEFANKRTIKRYKKTQTKEIRCKPITQSSAEFWQNDALK

Protein Length: 94

Fln nts: AAGACAACGCCACATGTTGAGGACCAACTACTTCGCCGGCCCCGAGAAAGAGCCTCCACCGCAGAGATGACTGACTTCCTTTCCATTTACTAGCAAGGTCGAAATAACCGCCAATACACAGATCACCGTGGGCTTGCCAGCTAATAGCAATAGCAGGATTAGGGTTTCGTTAACCTAAGGACTCTGTGGATGTGACTGGTTTGTTATAAGGTGCGTACAAATTCACA_-_ATGGGCCGCGGAAAGATTGAGATCAAGCGGATCGAGAATACTACAAATCGGCTAGTGACTTTCTGCAAGCGCCGAAACGGGTTACTGAAGAAGGCGTATGAATTGTCTGTGCTTTGCGAAGCCGAAGTGGCACTAATCGTCTTTTCAGACCGTGGAAAACTATTCGAATTTGCTAATAAAAGAACTATTAAGAGATATAAGAAGACACAAACGAAGGAGATACGATGCAAACCAATTACACAGTCGAGTGCAGAGTTTTGGCAAAATGACGCTCTAAAAA

Fln Alignment:

AllPine_b_rep_c60043___MGRGKIEIKRIENTTNRLVTFCKRRNGLLKKAYELSVLCEAEVALIVFSDRGKLFEFAN---KRTIKRYKKTQTKEIRCKPITQSSAEFWQNDALK
Q9ZTY6________________MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEFANHSVKRTIERYKKTCVDNNHGGAISESNSQYWQQEAGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain