SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene205284

Length: 397 nt

UniGene Fasta

>sp_v3.0_unigene205284
TGCTTTTGGTAAAGGAATAATTTGAATACCTCGGTTACATCATATCTAAGGAAGGAGTTAAGGTTGATTTCAATAAAATCAAAGTAATCATGGAATGACCAAGGCCAAATAACGTATCAAAACTAAGAGGATTCCTAGGATTAATAGGTTATTATAGAAGGTTCATCAAGAACTATGCTTAGTAACAACTCGATTATCTAAGTTGTTGAAGAAAAATTCTTTCCACTGGAGTAAGCAAGTAGAGGAGTGTTTTGAAGCATTGGAAAACGTTATGTCTTCTACACCTGCGTTAGCAACATCGAAATTCACAATACCCTTTGTGGTAGAATGTGATGCTTCAGGGGTTGGGATAGGTGCAATACCCATGCAAAATGACCGCTTGATAACTTTTGAGATT

Ace file of the UniGene sp_v3.0_unigene205284

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC	-	-	6.0e-25	64%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	57%

Source	Gene names
Sma3	LOC_Os03g47840; OSJNBa0053B21.11; OSJNBb0070O09.8; VITISV_003835; VITISV_031193; VITISV_043958;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	FBD	IPR006566	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00860.1	ORF158 DNA/RNA polymerases superfamily protein chrM:235916-236392 FORWARD LENGTH=158	2.0e-16	57%
RefSeq	Arabidopsis thaliana	NP_085542.1	hypothetical protein ArthMp075 (mitochondrion) [Arabidopsis thaliana]	3.0e-16	57%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 74 aas, putative chimeric sequence, your sequence is shorter than subject: 60 - 158

Fln protein: LLVKE*FEYLGYIISKEGVKVDFNKIKVIME*PRPNNVSKLRGFLGLIGYYRRFIKNYA*

Protein Length: 61

Fln nts: TGCTTTTGGTAAAGGAATAATTTGAATACCTCGGTTACATCATATCTAAGGAAGGAGTTAAGGTTGATTTCAATAAAATCAAAGTAATCATGGAATGACCAAGGCCAAATAACGTATCAAAACTAAGAGGATTCCTAGGATTAATAGGTTATTATAGAAGGTTCATCAAGAACTATGCTTAG___TAACAACTCGATTATCTAAGTTGTTGAAGAAAAATTCTTTCCACTGGAGTAAGCAAGTAGAGGAGTGTTTTGAAGCATTGGAAAACGTTATGTCTTCTACACCTGCGTTAGCAACATCGAAATTCACAATACCCTTTGTGGTAGAATGTGATGCTTCAGGGGTTGGGATAGGTGCAATACCCATGCAAAATGACCGCTTGATAACTTTTGAGATT

Fln Alignment:

AllPine_b_rep_c59998___YLGY--IISKEGVKVDFNKIKVIME*PRPNNVSKLRGFLGLIGYYRRFIKNY
P92523________________YLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain