SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene205277

Length: 394 nt

UniGene Fasta

>sp_v3.0_unigene205277
TCTCTTCCTTTGAATTGGATTACATGACATTTGGCATGAGTTCTGCTTGTGCTTTTGCTCTTAATCTTGCTGTGTTTCTTCTGATAGGAAAGACCTCGGCCTTGACGATGAATGTTGCTGGTGTTGTCAAGGACTGGCTGCTCATTGCATTTTCTTGGTCTGTAATAAAGGACGAGGTTACAGTCATAAATTTGATTGGATATGGACTGGCCTTTCTGGCTGTCTGTTACTATAATCATTTGAAGCTTCAAGCTCTCAAGGCCAATGACAGCCAACCGAAGCAGCTCAGACCTGCAGCTGAAGCTGATGACGAAGAAGAAGGTTTGATAACGAAGAATGGGAGATTGTCAAACAGAGATTCGGAACTAGTAGAGAAAAATCAAACTCAAGCTTG

Ace file of the UniGene sp_v3.0_unigene205277

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Plastidic phosphate translocator-like protein1 n=1 Tax=Mesembryanthemum crystallinum RepID=Q59IV6_MESCR	-	-	5.0e-37	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Plastidic phosphate translocator-like protein1	-	-	2.564e-11	-

Source	Gene names
Sma3	AT2G25520; AT4g32390; At2g25520; At4g32390; At5g11230; At5g25400; CHLREDRAFT_135100; CHLREDRAFT_186850; F2I11_120; F8B4.90; GSVIVT00016883001; GSVIVT00032633001; LOC_Os11g04380; LOC_Os12g04170; MICPUCDRAFT_34792; MICPUN_90920; OJ1579_G03.4; OSTLU_27689; O

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Basic leucine zipper	IPR011700	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G25520.1	Drug/metabolite transporter superfamily protein chr2:10860950-10861993 FORWARD LENGTH=347	0.0	66%
RefSeq	Arabidopsis thaliana	NP_180122.1	putative phosphate/phosphoenolpyruvate translocator protein [Arabidopsis thaliana]	0.0	66%
RefSeq	Populus trichocarpa	XP_002309616.1	predicted protein [Populus trichocarpa]	1.4013e-45	73%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQV0

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 130 - 357

Fln protein: SSFELDYMTFGMSSACAFALNLAVFLLIGKTSALTMNVAGVVKDWLLIAFSWSVIKDEVTVINLIGYGLAFLAVCYYNHLKLQALKANDSQPKQLRPAAEADDEEEGLITKNGRLSNRDSELVEKNQTQA

Protein Length: 131

Fln nts: TCTCTTCCTTTGAATTGGATTACATGACATTTGGCATGAGTTCTGCTTGTGCTTTTGCTCTTAATCTTGCTGTGTTTCTTCTGATAGGAAAGACCTCGGCCTTGACGATGAATGTTGCTGGTGTTGTCAAGGACTGGCTGCTCATTGCATTTTCTTGGTCTGTAATAAAGGACGAGGTTACAGTCATAAATTTGATTGGATATGGACTGGCCTTTCTGGCTGTCTGTTACTATAATCATTTGAAGCTTCAAGCTCTCAAGGCCAATGACAGCCAACCGAAGCAGCTCAGACCTGCAGCTGAAGCTGATGACGAAGAAGAAGGTTTGATAACGAAGAATGGGAGATTGTCAAACAGAGATTCGGAACTAGTAGAGAAAAATCAAACTCAAGCTTG

Fln Alignment:

AllPine_b_rep_c59986___SSFELDYMTFGMSSACAFALNLAVFLLIGKTSALTMNVAGVVKDWLLIAFSWSVIKDEVTVINLIGYGLAFLAVCYYNHLKLQALKANDSQPKQLRPAAEADDEEEGLITKNGRLSNRDSE
B8LQV0________________STFHLDYFIFGTNSVCAFALNLAVFLLIGKTSALTMNVAGVVKDWLLIAFSWSIIKDTVTPVNLLGYGLAFLGVCYYNHSKLQALKLKEAQ-KKSAPA----DEEAGLLME--QRPERDGE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain