SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene205221

Length: 237 nt

UniGene Fasta

>sp_v3.0_unigene205221
CTCTTAGAATTCTCAGGAAAACTATATCAGTGGTTCCAGAACTAAGTGCTGAACGAGATGATGTATGCAAAGGTTGCGCTTTGGGCAAGTATGCCAAAGCTCCATTTTCTAAAAGTAACAATAGGGTGAAGAGTGTGCTAGGATTTATACACACAAACATTTGTAGACTGATGTTCACAAGTTCTCTTAGTGGTGCTGAATACTTTGTCACCTTCATTGATGACCATTCTAGGATTT

Ace file of the UniGene sp_v3.0_unigene205221

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVT9_9POAL	-	-	3.0e-09	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 241 aas, your sequence is shorter than subject: 78 - 407

Fln protein: LRILRKTISVVPELSAERDDVCKGCALGKYAKAPFSKSNNRVKSVLGFIHTNICRLMFTSSLSGAEYFVTFIDDHSRI

Protein Length: 79

Fln nts: CTCTTAGAATTCTCAGGAAAACTATATCAGTGGTTCCAGAACTAAGTGCTGAACGAGATGATGTATGCAAAGGTTGCGCTTTGGGCAAGTATGCCAAAGCTCCATTTTCTAAAAGTAACAATAGGGTGAAGAGTGTGCTAGGATTTATACACACAAACATTTGTAGACTGATGTTCACAAGTTCTCTTAGTGGTGCTGAATACTTTGTCACCTTCATTGATGACCATTCTAGGATTT

Fln Alignment:

AllPine_b_rep_c59887___VPELSAERDDVCKGCALGKYAKAPFSKSNN-RVKSVLGFIHTNICRLMFTSSLSGAEYFVTFIDDHSR
B8LKX7________________LPKIS-QSQGVCEGCMSGKQHMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain