SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene205053

Length: 510 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene205053
ATCAAGATTGAGCTCCACCACGGCTCGCGCAAGAGCGTCGCTACACTCCGCACCGTCCGAACCCTCATCAACAACCTGATCATCGGTGTCACCAAGGGCTACAAATACAAGATGCGATACGTCTACGCCCATTTCCCCATCAACGTCAACATCGAGAAGAACAAGGAGACCGACCATTCGAGGTCGAGATCAGGAACTTCATCGGCGAGAAGCTCGTACGAAGGGTTGTCATGAGGCCCGGTGTGAATGTCGAGGCATCGAAGAACCAGAAGGATGAGCTGCAGCTCTCCGGAAACTCCCTCGAGGATGTTTCCCAGTCTGCGGCCGACATCCAGCAGATCTGCAAGGTCCGCAACAAGGATATCCGAAAGTTCTTGGACGGTCTTTACGTCTCGGAGCGTGGCAACATCGAGGAGGATGCTTAAGCGATTCGCGGGAGTACGGATTGATTCTTTCACGGGCATATGAACGACTACGAGTGTCTTTGCATCACGGACTGCGGTCGGCGCC

Ace file of the UniGene sp_v3.0_unigene205053 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Similar to 60s ribosomal protein l9 n=1 Tax=Leptosphaeria maculans RepID=E4ZQI2_LEPMC	-	-	0.0	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	60S ribosomal protein L9	-	-	3.488e-18	-

Source	Gene names
Sma3	At1g33120; At1g33140; At4g10450; CHLREDRAFT_109540; CHLREDRAFT_139831; F7L13.30; GSVIVT00034120001; GSVIVT00037149001; MICPUCDRAFT_32821; OJ1435_F07.31; OSTLU_45591; Os02g0103700; Os09g0485900; OsI_05474; OsI_31831; OsJ_05010; OsJ_29817; Ot04g01850; PHATR

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L6	IPR000702	-	0.0	-
Sma3	Ribosomal protein L6, conserved site-2	IPR002359	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G10450.1	Ribosomal protein L6 family chr4:6463201-6464458 REVERSE LENGTH=194	1.0e-32	59%
RefSeq	Arabidopsis thaliana	NP_192783.1	60S ribosomal protein L9-2 [Arabidopsis thaliana]	2.0e-32	59%
RefSeq	Populus trichocarpa	XP_002317034.1	predicted protein [Populus trichocarpa]	2.0e-34	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQT7

Fln msg: Overlapping hits, possible frame ERROR between 174 and 132, your sequence is shorter than subject: 142 - 191

Fln protein: IKIELHHGSRKSVATLRTVRTLINNLIIGVTKGYKYKMRYVYAxxxxxxxxxxxxxxxxFEVEIRNFIGEKLVRRVVMRPGVNVEASKNQKDELQLSGNSLEDVSQSAADIQQICKVRNKDIRKFLDGLYVSERGNIEEDA*

Protein Length: 143

Fln nts: ATCAAGATTGAGCTCCACCACGGCTCGCGCAAGAGCGTCGCTACACTCCGCACCGTCCGAACCCTCATCAACAACCTGATCATCGGTGTCACCAAGGGCTACAAATACAAGATGCGATACGTCTACGCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTCGAGGTCGAGATCAGGAACTTCATCGGCGAGAAGCTCGTACGAAGGGTTGTCATGAGGCCCGGTGTGAATGTCGAGGCATCGAAGAACCAGAAGGATGAGCTGCAGCTCTCCGGAAACTCCCTCGAGGATGTTTCCCAGTCTGCGGCCGACATCCAGCAGATCTGCAAGGTCCGCAACAAGGATATCCGAAAGTTCTTGGACGGTCTTTACGTCTCGGAGCGTGGCAACATCGAGGAGGATGCTTAAGCGATTCGCGGGAGTACGGATTGATTCTTTCACGGGCATATGAACGACTACGAGTGTCTTTGCATCACGGACTGCGGTCGGCGCC

Fln Alignment:

AllPine_b_rep_c59586___IKIELHHGSRKSVATLRTVRTLINNLIIGVTKGYKYKMRYVYAHxxxxxxxxxxxxxxPFEVEIRNFIGEKLVRRVVMRPGVNVEASKNQKDELQLSGNSLEDVSQSAADIQQICKVRNKDIRKFLDGLYVSERGNIEE
B8LQT7________________IKIELHHGSRKSVATLRTVRTLINNLIIGVTKGYKYKMRYVYAHxxxxxxxxxxxxxxQWEVEIRNFIGEKLVRKVIMRPGVDVVASANQKDELVLSGNSLEDVSQSAADIQQICKVRNKDIRKFLDGLYVSERGNIED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain