SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene204973

Length: 391 nt

UniGene Fasta

>sp_v3.0_unigene204973
ACATTGAAGACTGTTAAGGACCTCATTTACAAGAGAGGTTTTGGAAAGGTTTCTGGTCAAAGAATCCCAATCAGTTCGAATACCGTTGTCAGTGCGGCTCTTGGTGACAAGGGATTCCAATGCATCGAAGATGTTATTCACGAAATATACACTGTTGGACCTGAATTCAAGGCAGTTTCCAATTTCCTATGGCCTATCAAGTTGTCGTCTCCAAAGGGTGGATTCTTGGGAAAGAAGCTGAACCACCACAACGAAGGTGGATCATGTGGTCAGCAAGGTGAAAGAATCAATGTGTTGATCAAGAAAATGCTTTAAATATTGATTGTACGATAGTTTTTACTTGAGCGATGTTCAATGCAAATGTTGTAATCAGCCACCTCCTCGTCAAAAG

Ace file of the UniGene sp_v3.0_unigene204973

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L7 putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WTG6_9STRA	-	-	2.0e-31	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	60S ribosomal protein L7-2	-	-	1.005e-07	-

Source	Gene names
Sma3	At2g01250; At2g44120; At3g13580; B1047A05.37; CHLREDRAFT_206194; F10A8.13; GSVIVT00006768001; GSVIVT00008359001; GSVIVT00013102001; GSVIVT00013106001; GSVIVT00033757001; K20M4.2; MICPUCDRAFT_31664; MICPUN_106801; MtrDRAFT_AC148819g1v2; OSJNBa0035M09.3; OS

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000517	-	-
Sma3	Ribosomal protein L7, eukaryotic	IPR005998	-	-
Sma3	Ribosomal protein L30, N-terminal	IPR012988	-	-
Sma3	Ribosomal protein L30, conserved site	IPR018038	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G44120.2	-	2.0e-33	54%
RefSeq	Arabidopsis thaliana	NP_850410.1	60S ribosomal protein L7-3 [Arabidopsis thaliana]	3.0e-33	54%
RefSeq	Populus trichocarpa	XP_002308103.1	predicted protein [Populus trichocarpa]	3.0e-34	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR08

Fln msg: your sequence is shorter than subject: 105 - 246

Fln protein: TLKTVKDLIYKRGFGKVSGQRIPISSNTVVSAALGDKGFQCIEDVIHEIYTVGPEFKAVSNFLWPIKLSSPKGGFLGKKLNHHNEGGSCGQQGERINVLIKKML*

Protein Length: 106

Fln nts: ACATTGAAGACTGTTAAGGACCTCATTTACAAGAGAGGTTTTGGAAAGGTTTCTGGTCAAAGAATCCCAATCAGTTCGAATACCGTTGTCAGTGCGGCTCTTGGTGACAAGGGATTCCAATGCATCGAAGATGTTATTCACGAAATATACACTGTTGGACCTGAATTCAAGGCAGTTTCCAATTTCCTATGGCCTATCAAGTTGTCGTCTCCAAAGGGTGGATTCTTGGGAAAGAAGCTGAACCACCACAACGAAGGTGGATCATGTGGTCAGCAAGGTGAAAGAATCAATGTGTTGATCAAGAAAATGCTTTAA___ATATTGATTGTACGATAGTTTTTACTTGAGCGATGTTCAATGCAAATGTTGTAATCAGCCACCTCCTCGTCAAAAG

Fln Alignment:

AllPine_b_rep_c59470___LKTVKDLIYKRGFGKVSGQRIPISSNTVVSAALGDKGFQCIEDVIHEIYTVGPEFKAVSNFLWPIKLSSPKGGFLGKKLNHHNEGGSCGQQGERINVLIKKM
A9NR08________________LKSIRELIYKRGYGKVDKQRIPLTDNSVIEKVLGQYGIICIEDLIHEIITVGPHFTKANNFLWPVKLSAPSGG-LKKKRNHYIEGGDAGNRELKINELIRRM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain