SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene204971

Length: 323 nt

UniGene Fasta

>sp_v3.0_unigene204971
TGCGTCGTATGCGTGTTCTGCGTCGATTGCTCCGCAAGTATCGTGAGAGCCAGAAAATTGACAAATACCTCTACCACGAGTTGTACCTCAAGGCCAAGGGTAGCGGCTTCAAGAACAAGCGTGTGTTGATGGAACACATTCACAAGGCCAAGGCTGAGCAAATTCGTGAGAAGAATCTTCAGCAGCAGGCTGAGGCTCGCCGCGACAAGGCCCGCGCCAAGCGCGCTCGTCACACTCAACGTGCCACCGAGAAGGAGGAGACCCGCAACCAGGAAGTGGAACAGGCCAAGAGTGTTGCCGCCAACTAGATGTCAGAGTCTTTC

Ace file of the UniGene sp_v3.0_unigene204971

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L19 (Fragment) n=1 Tax=Crassostrea gigas RepID=Q70MM2_CRAGI	-	-	2.0e-14	47%
FL-Next	tr=Putative uncharacterized protein; subsp. trichocarpa).	-	-	0.0	66%
Sma3	Ribosomal protein L19	-	-	0.0	-

Source	Gene names
Sma3	At1g02780; At3g16780; At4g02230; CHLREDRAFT_195590; EMB2386; F22D16.23; GSVIVT00017864001; GSVIVT00028043001; GSVIVT00033052001; LOC_Os03g21940; LOC_Os03g38260; MGL6.25; MICPUCDRAFT_49436; MICPUN_112659; OSJNBa0083K01.10; OSJNBb0016P23.5; OSTLU_119482; Os

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L19/L19e	IPR000196	-	-
Sma3	Ribosomal protein L19/L19e, domain 1	IPR015972	-	-
Sma3	Ribosomal protein L19/L19e, domain 3	IPR015974	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02230.1	Ribosomal protein L19e family protein chr4:979391-980640 REVERSE LENGTH=208	1.0e-15	62%
RefSeq	Arabidopsis thaliana	NP_192132.1	60S ribosomal protein L19-3 [Arabidopsis thaliana]	1.0e-15	62%
RefSeq	Populus trichocarpa	XP_002329697.1	predicted protein [Populus trichocarpa]	2.0e-16	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A9P8Q8

Fln msg: atg_distance in limit (1-15): atg_distance = 2,

Fln protein: MRVLRRLLRKYRESQKIDKYLYHELYLKAKGSGFKNKRVLMEHIHKAKAEQIREKNLQQQAEARRDKARAKRARHTQRATEKEETRNQEVEQAKSVAAN*

Protein Length: 101

Fln nts: TGCGTCGT_-_ATGCGTGTTCTGCGTCGATTGCTCCGCAAGTATCGTGAGAGCCAGAAAATTGACAAATACCTCTACCACGAGTTGTACCTCAAGGCCAAGGGTAGCGGCTTCAAGAACAAGCGTGTGTTGATGGAACACATTCACAAGGCCAAGGCTGAGCAAATTCGTGAGAAGAATCTTCAGCAGCAGGCTGAGGCTCGCCGCGACAAGGCCCGCGCCAAGCGCGCTCGTCACACTCAACGTGCCACCGAGAAGGAGGAGACCCGCAACCAGGAAGTGGAACAGGCCAAGAGTGTTGCCGCCAACTAG___ATGTCAGAGTCTTTC

Fln Alignment:

AllPine_b_rep_c59468___ESQKIDKYLYHELYLKAKGSGFKNKRVLMEHIHKAKAEQIREKNLQQQ
A9P8Q8________________ESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain