SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene204923

Length: 159 nt

UniGene Fasta

>sp_v3.0_unigene204923
CTTTCTCATATTTTGGCCACATTTAAGATCTTGATGGAAGCCAGGGCGGTTGCAACGATGGCTTTCAGGACGTGTCAATTATGTCATATACAGCAAAATATGCAAGTGCATTTTATGGACCTTTCAGAGAAGCTCTTGATTCCAATCCACGATTTGGAG

Ace file of the UniGene sp_v3.0_unigene204923

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Delta-aminolevulinic acid dehydratase n=1 Tax=Picea sitchensis RepID=B8LR35_PICSI	-	-	1.0e-11	97%
FL-Next	sp=Delta-aminolevulinic acid dehydratase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Delta-aminolevulinic acid dehydratase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Porphobilinogen synthase.	EC:4.2.1.24	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Porphyrin and chlorophyll metabolism	00860	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	ALA1; ALA2; ALAD; At1g69740; CHLREDRAFT_186639; GSVIVT00015405001; HEMB; LOC_Os06g49110; Os06g0704600; OsI_24384; OsJ_22561; Ot01g02360; P0018H04.2; PHATRDRAFT_50723; PHYPADRAFT_173375; PHYPADRAFT_221821; POPTRDRAFT_551443; RCOM_1030560; T6C23.6; THAPSDRA

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	porphobilinogen synthase activity	GO:0004655	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-
Sma3	chlorophyll biosynthetic process	GO:0015995	Biological Process	-
Sma3	tetrapyrrole biosynthetic process	GO:0033014	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Porphobilinogen synthase	IPR001731	-	0.0	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69740.1	HEMB1 Aldolase superfamily protein chr1:26232197-26234713 FORWARD LENGTH=430	2.0e-15	91%
RefSeq	Arabidopsis thaliana	NP_001077800.1	delta-aminolevulinic acid dehydratase [Arabidopsis thaliana]	2.0e-15	91%
RefSeq	Populus trichocarpa	XP_002300981.1	predicted protein [Populus trichocarpa]	9.0e-14	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR35

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 112 aas, your sequence is shorter than subject: 52 - 430

Fln protein: FSYFGHI*DLDGSQGGCNDGFQDVSIMSYTAKYASAFYGPFREALDSNPRFG

Protein Length: 53

Fln nts: CTTTCTCATATTTTGGCCACATTTAAGATCTTGATGGAAGCCAGGGCGGTTGCAACGATGGCTTTCAGGACGTGTCAATTATGTCATATACAGCAAAATATGCAAGTGCATTTTATGGACCTTTCAGAGAAGCTCTTGATTCCAATCCACGATTTGGAG

Fln Alignment:

AllPine_b_rep_c59408___DGFQDVSIMSYTAKYASAFYGPFREALDSNPRFG
B8LR35________________EGFQDVSIMSYTAKYASAFYGPFREALDSNPRFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain