SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene204773

Length: 462 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene204773
GAAAGACAAAATTTTTGAGTCCAAGCATTTGGGCAGGGGTACTGATTTTGACCTCGTGATCTCCAACGCACAAACAAATGAAGGTCTGTCCTATTTGCTTGAGAGTTGTTTTACAAAAGTAATTATGTCGTGTGTTCTGTATAAATATTTCAAACCATGCTAGAATAAGCAGAGAAAGAATTCAGACTCTTTAGGTTTTTGGTGTGCTTTGTTTTAATTTAATTTGTCAAATTATGCCAGGCAAATTTAGAAAAGACATGATTACTATGAATAGAGATTTTTCAGGCAAACCTAGAATAAGTGAAAAAACGTGTCCAGTTTTAATGGATTTTTATTCAGGCTAATCTAGAATAAGTGAAATAGTTGTTCCTCTGGCTTGATCATTTTTTGGCGAAACTAGATTAAGGGAAAAACATGTTCAGTTTGGGTAGATTTTGTTGTTCTGGCGATTATTTTAAAGGG

Ace file of the UniGene sp_v3.0_unigene204773 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retinoblastoma-binding protein, putative n=1 Tax=Ricinus communis RepID=B9SXE4_RICCO	-	-	2.0e-06	88%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	88%

Source	Gene names
Sma3	GSVIVT00009526001; POPTRDRAFT_423997; POPTRDRAFT_757044; RCOM_1389220; VITISV_001078;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	DWNN domain	IPR014891	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GYD2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 86 aas, your sequence is shorter than subject: 54 - 268

Fln protein: KDKIFESKHLGRGTDFDLVISNAQTNEGLSYLLESCFTKVIMSCVLYKYFKPC*

Protein Length: 55

Fln nts: GAAAGACAAAATTTTTGAGTCCAAGCATTTGGGCAGGGGTACTGATTTTGACCTCGTGATCTCCAACGCACAAACAAATGAAGGTCTGTCCTATTTGCTTGAGAGTTGTTTTACAAAAGTAATTATGTCGTGTGTTCTGTATAAATATTTCAAACCATGCTAGAATAAGCAGAGAAAGAATTCAGACTCTTTAGGTTTTTGGTGTGCTTTGTTTTAATTTAATTTGTCAAATTATGCCAGGCAAATTTAGAAAAGACATGATTACTATGAATAGAGATTTTTCAGGCAAACCTAGAATAAGTGAAAAAACGTGTCCAGTTTTAATGGATTTTTATTCAGGCTAATCTAGAATAAGTGAAATAGTTGTTCCTCTGGCTTGATCATTTTTTGGCGAAACTAGATTAAGGGAAAAACATGTTCAGTTTGGGTAGATTTTGTTGTTCTGGCGATTATTTTAAAGGG

Fln Alignment:

AllPine_b_rep_c59143___KDKIFESKHLGRGTDFDLVISNAQTNE
B9GYD2________________KEKIFESKHLGRGTDFDLVVTNAQTNE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain