SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene204651

Length: 436 nt

UniGene Fasta

>sp_v3.0_unigene204651
AAAGGCTCAATCTTTAATTCCATAAATCTCAATTTAATTTATAAGAGAGGCTAAGACATGAAACACATTCTTACCGAAGAAGAACTCGTCATCCCCACTGGAGTCGATGTTGAATTCAAGGCCAGAGAAATCACCGTCAAGGGTGCCAGAGGAACCGTCACCAGAGCTTTCAAGCACGTTCCTTTCTCCGTCTCCAAGAGTGAAGACAAAAAGGGTATTAGAAAATTGAGACTCCAACTCTGGATGTCCAAGAGAAAGCAAAAGACCTGCGTTACCTCCGTCTCTTCTCAAATCAGAAACATGATCAACGGTGTCACTAAGGGTTACAGATTCAAGATGAGATTCGCCTATGCCCATTTCCCCATCAACTCCCTCATCACCAACAACAATACATGCCTCGAAATCAAGAACTTCTTGGGTGAAAAGATCATCAGAA

Ace file of the UniGene sp_v3.0_unigene204651

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein L9 [Lysiphlebus testaceipes]	-	-	1.0e-27	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	60S ribosomal protein L9	-	-	3.975e-11	-

Source	Gene names
Sma3	GSVIVT00034120001; GSVIVT00037149001; OJ1435_F07.31; Os02g0103700; Os09g0485900; OsI_05474; OsI_31831; OsJ_05010; OsJ_29817; Ot04g01850; PHYPADRAFT_108826; PHYPADRAFT_182540; PHYPADRAFT_191598; POPTRDRAFT_177086; POPTRDRAFT_550502; POPTRDRAFT_569228; POPT

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L6	IPR000702	-	0.0	-
Sma3	Ribosomal protein L6, conserved site-2	IPR002359	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002300532.1	predicted protein, partial [Populus trichocarpa]	2.0e-40	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ11

Fln msg: Distance to subject end: 66 aas, your sequence is shorter than subject: 126 - 189

Fln protein: MKHILTEEELVIPTGVDVEFKAREITVKGARGTVTRAFKHVPFSVSKSEDKKGIRKLRLQLWMSKRKQKTCVTSVSSQIRNMINGVTKGYRFKMRFAYAHFPINSLITNNNTCLEIKNFLGEKIIR

Protein Length: 127

Fln nts: AAAGGCTCAATCTTTAATTCCATAAATCTCAATTTAATTTATAAGAGAGGCTAAGAC_-_ATGAAACACATTCTTACCGAAGAAGAACTCGTCATCCCCACTGGAGTCGATGTTGAATTCAAGGCCAGAGAAATCACCGTCAAGGGTGCCAGAGGAACCGTCACCAGAGCTTTCAAGCACGTTCCTTTCTCCGTCTCCAAGAGTGAAGACAAAAAGGGTATTAGAAAATTGAGACTCCAACTCTGGATGTCCAAGAGAAAGCAAAAGACCTGCGTTACCTCCGTCTCTTCTCAAATCAGAAACATGATCAACGGTGTCACTAAGGGTTACAGATTCAAGATGAGATTCGCCTATGCCCATTTCCCCATCAACTCCCTCATCACCAACAACAATACATGCCTCGAAATCAAGAACTTCTTGGGTGAAAAGATCATCAGAA

Fln Alignment:

AllPine_b_rep_c58970___MKHILTEEELVIPTGVDVEFKAREITVKGARGTVTRAFKHVPFSVSKSEDKKGIRKLRLQLWMSKRKQKTCVTSVSSQIRNMINGVTKGYRFKMRFAYAHFPINSLITNNNTCLEIKNFLGEKIIR
A9NQ11________________MKTILASQTMDIPEGVKVEVRAKQIKVTGSRGTLTRNFKHLNLDFQLME---GGRKLKVDAWFGSRKTMAAIRTAISHVTNLITGVTKGYRYKMRFVYAHFPINASIGGDKKNIEIRNFLGEKKVR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain