SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene204619

Length: 466 nt

UniGene Fasta

>sp_v3.0_unigene204619
TTGGCTCGCGCATTGACGCTGTGGCATCTCGCGTTGAGACTGCTGTGCGGATGCGTACGGTCACAGGAAGCATGGCAAACATTGTGCGTGGCATGGAGCAAGCCCTTCAGACAATGGATATGCAAAAAATCACCATGGTCATGGACAAGTTCGAGCAGCAGTTTGAGGATCTTGACGTACAGGGTAAGTACGTGGAGAACAGCATGAACCAGACCACAGCGCTGAGCACACCGCAAGAGGAGGTGGACTCGCTCATCAGTCAGGTTGCAGACGAGTACGGACTACAGCTCTCGGAAAAGATCGCCCCGAGCCCGCTCGGCGCCCCTGTGTCAGCAAAGGCACAGCAAAAGGAGGAGCAAGATGACCTCTTTGCGAGGCTCAATAACCTCAAAGCCACGTAGGTGGCAGTTGCATCCTGCTGTAACAGTAGATTGTACTATTGTACATATGAAATATTCAACACGAC

Ace file of the UniGene sp_v3.0_unigene204619

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Charged multivesicular body protein 1 n=4 Tax=Dictyosteliida RepID=CHMP1_DICDI	-	-	2.0e-36	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%

Source	Gene names
Sma3	At1g17730; At1g17730/F11A6_15; At1g73030; At1g73030/F3N23.23; F11A6.7; F3N23.23; GSVIVT00034212001; PHATRDRAFT_11901; PHATRDRAFT_31375; POPTRDRAFT_815268; RCOM_1485760; THAPSDRAFT_7887; VITISV_016190;

Source	GOs	Term	Type	e value	Identity
Sma3	protein transport	GO:0015031	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Snf7	IPR005024	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G17730.1	VPS46.1, CHMP1B vacuolar protein sorting 46.1 chr1:6099210-6100153 FORWARD LENGTH=203	8.0e-36	46%
RefSeq	Arabidopsis thaliana	NP_565053.1	SNF7-like protein [Arabidopsis thaliana]	1.0e-35	46%
RefSeq	Populus trichocarpa	XP_002299759.1	predicted protein [Populus trichocarpa]	3.0e-34	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMS6

Fln msg: your sequence is shorter than subject: 133 - 203

Fln protein: GSRIDAVASRVETAVRMRTVTGSMANIVRGMEQALQTMDMQKITMVMDKFEQQFEDLDVQGKYVENSMNQTTALSTPQEEVDSLISQVADEYGLQLSEKIAPSPLGAPVSAKAQQKEEQDDLFARLNNLKAT*

Protein Length: 134

Fln nts: TTGGCTCGCGCATTGACGCTGTGGCATCTCGCGTTGAGACTGCTGTGCGGATGCGTACGGTCACAGGAAGCATGGCAAACATTGTGCGTGGCATGGAGCAAGCCCTTCAGACAATGGATATGCAAAAAATCACCATGGTCATGGACAAGTTCGAGCAGCAGTTTGAGGATCTTGACGTACAGGGTAAGTACGTGGAGAACAGCATGAACCAGACCACAGCGCTGAGCACACCGCAAGAGGAGGTGGACTCGCTCATCAGTCAGGTTGCAGACGAGTACGGACTACAGCTCTCGGAAAAGATCGCCCCGAGCCCGCTCGGCGCCCCTGTGTCAGCAAAGGCACAGCAAAAGGAGGAGCAAGATGACCTCTTTGCGAGGCTCAATAACCTCAAAGCCACGTAG___GTGGCAGTTGCATCCTGCTGTAACAGTAGATTGTACTATTGTACATATGAAATATTCAACACGAC

Fln Alignment:

AllPine_b_rep_c58928___SRIDAVASRVETAVRMRTVTGSMANIVRGMEQALQTMDMQKITMVMDKFEQQFEDLDVQGKYVENSMNQTTALSTPQEEVDSLISQVADEYGLQLSEKIAPSPLGAPVSAKAQQKEEQDDLFARLNNLKA
A9NMS6________________SRLDAVVSRLDTQAKMMTINKSMTSIVKALDSALATGNLQKMSETMDQFETQFVNMEVQSQFVENAMAGSTSLSTPEDQVNTLMQQVADDYGLEVSVGL-PQAAGHAIPTK-PEKVEEDDLSRRLAELKS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain