SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene204483

Length: 179 nt

UniGene Fasta

>sp_v3.0_unigene204483
TGATCATCTTATGACATTTTCAGAATCGACAAAGGCTGCACTTAGAAGAATGGGCATAGCTATGCTGTACAGTCATCAGGCAGAAGCTATACGAGCTTCACTCTCACATAAAGATGTTGTTGTGGCAACTTCAACTGCTAGTGGCAAGTCACTTTGCTACAATATCCATATTAAGCCAG

Ace file of the UniGene sp_v3.0_unigene204483

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA helicase-like protein [Oryza sativa Japonica Group] dbj\|BAD32021.1\| ATP-dependent RNA helicase-like protein [Oryza sativa Japonica Group]	-	-	2.0e-09	54%
FL-Next	tr=Predicted protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	66%

Source	Gene names
Sma3	At5g08110; GSVIVT00017542001; RCOM_1467520; T22D6_50;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G08110.1	" nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases chr5:2594854-2600114 REVERSE LENGTH=1141"	2.0e-15	64%
RefSeq	Arabidopsis thaliana	NP_196428.2	UBQ, helicase-c and DEAD-like helicase domain-containing protein [Arabidopsis thaliana]	3.0e-15	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7M185

Fln msg: Distance to subject end: 625 aas, your sequence is shorter than subject: 59 - 1067

Fln protein: DHLMTFSESTKAALRRMGIAMLYSHQAEAIRASLSHKDVVVATSTASGKSLCYNIHIKP

Protein Length: 60

Fln nts: TGATCATCTTATGACATTTTCAGAATCGACAAAGGCTGCACTTAGAAGAATGGGCATAGCTATGCTGTACAGTCATCAGGCAGAAGCTATACGAGCTTCACTCTCACATAAAGATGTTGTTGTGGCAACTTCAACTGCTAGTGGCAAGTCACTTTGCTACAATATCCATATTAAGCCAG

Fln Alignment:

AllPine_b_rep_c58754___SESTKAALRRMGIAMLYSHQAEAIRASLSHKDVVVATSTASGKSLCYNIHI
D7M185________________SETTKSALKRIGLNTLYSHQAEAISAALSGKNVSVATMTSSGKSLCYNVPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain