SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene204473

Length: 517 nt

UniGene Fasta

>sp_v3.0_unigene204473
TACCGGGGGGGACGTCAACGCCGCCGTCGCGACCATCAAAACGAAGCGCACGATTCAGTTCGTGGATTGGTGTCCGACCGGCTTCAAGGTCGGCATCAACTACCAGCCGCCCACCGTCGTCCCGGGCGGTGACCTCGCCAAAGTGCAGCGCGCTGTGTGCATGATCTCGAACACGACGGCCGTCGCGGAGTCGCTCTCGCGCATCGACCACAAATTCGATTTGATGTACGCCAAACGTGCGTTCGTGCACTGGTACGTCGGTGAGGGTATGGAGGAGGGTGAGTTCTCGGAGGCCCGTGAGGACTTGGCCGCCCTCGAGAAGGACTACGAGGAGGTCGGTTCGGAGTCCGTCGATGGCGCCGGTGAGGGTGAGGGCGATGAGGCCGCCCCGCAGGACGCCCCGGCGGGCGCTGACGGCTAAATGCAAGTGCGCAAGCGCCTGCGTTTTTCTCTCGCTCGTTTCCTCTCTGTTTGGTGCATTCTTTTCGCATCACACACAATAAACCTGAATAAATAC

Ace file of the UniGene sp_v3.0_unigene204473

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: LOW QUALITY PROTEIN: tubulin alpha-3C/D chain-like n=1 Tax=Pongo abelii RepID=UPI0001D601A7	-	-	0.0	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Alpha tubulin	-	-	1.97e-13	-

Source	Gene names
Sma3	AT1; AT1G50010; AT5G19780; ATUB3; ATub1; At1g04820; At1g50010; At1g64740; At5g19770; BYtuba; CGTU; F13O11.5; F3; GSVIVT00010650001; GSVIVT00015032001; GSVIVT00020930001; GSVIVT00024805001; GSVIVT00025462001; GSVIVT00038615001; LOC_Os03g11970; LOC_Os03g516

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleomorph	GO:0033009	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G19780.1	TUA5 tubulin alpha-5 chr5:6687212-6688926 FORWARD LENGTH=450	94%
RefSeq	Arabidopsis thaliana	NP_197479.1	tubulin alpha-3/alpha-5 chain [Arabidopsis thaliana]	94%
RefSeq	Populus trichocarpa	XP_002324047.1	tubulin alpha-7 chain [Populus trichocarpa]	95%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSC4

Fln msg: atg_distance in limit (1-15): atg_distance = 12, W2: There is no M at the beginning,

Fln protein: TGGDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMISNTTAVAESLSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGSESVDGAGEGEGDEAAPQDAPAGADG*

Protein Length: 141

Fln nts: TACCGGGGGGGACGTCAACGCCGCCGTCGCGACCATCAAAACGAAGCGCACGATTCAGTTCGTGGATTGGTGTCCGACCGGCTTCAAGGTCGGCATCAACTACCAGCCGCCCACCGTCGTCCCGGGCGGTGACCTCGCCAAAGTGCAGCGCGCTGTGTGCATGATCTCGAACACGACGGCCGTCGCGGAGTCGCTCTCGCGCATCGACCACAAATTCGATTTGATGTACGCCAAACGTGCGTTCGTGCACTGGTACGTCGGTGAGGGTATGGAGGAGGGTGAGTTCTCGGAGGCCCGTGAGGACTTGGCCGCCCTCGAGAAGGACTACGAGGAGGTCGGTTCGGAGTCCGTCGATGGCGCCGGTGAGGGTGAGGGCGATGAGGCCGCCCCGCAGGACGCCCCGGCGGGCGCTGACGGCTAA___ATGCAAGTGCGCAAGCGCCTGCGTTTTTCTCTCGCTCGTTTCCTCTCTGTTTGGTGCATTCTTTTCGCATCACACACAATAAACCTGAATAAATAC

Fln Alignment:

AllPine_b_rep_c58740___DVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMISNTTAVAESLSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
C0PSC4________________DVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNLTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain