SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene204320

Length: 207 nt

UniGene Fasta

>sp_v3.0_unigene204320
ATCAAAGCAACACAAGGACCAGAGATCCTTGCAGTTACTCGGCCGATCGATCATGGCTGCAAATATGTTAAGGAGTGTTGTTGTTGTTGCTGTTTGCTCATGGTTATGGTGAACGCAGTGTCTGCAGCAGGCAAAGCAAAATGCACGAAAAAATGGTACAAGAGATGCTATGGATATCAACATGATTGCCCTGCTCAATGTCCATAT

Ace file of the UniGene sp_v3.0_unigene204320

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Late embryogenesis abundant protein n=1 Tax=Picea glauca RepID=Q40862_PICGL	-	-	2.0e-13	81%
FL-Next	tr=Late embryogenesis abundant protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	81%

Source	Gene names
Sma3	EMB7;

Source	InterPros	Term	Type	e value	Identity
Sma3	Root cap	IPR009646	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q40862

Fln msg: Distance to subject end: 268 aas, your sequence is shorter than subject: 36 - 320

Fln protein: MVMVNAVSAAGKAKCTKKWYKRCYGYQHDCPAQCPY

Protein Length: 37

Fln nts: ATCAAAGCAACACAAGGACCAGAGATCCTTGCAGTTACTCGGCCGATCGATCATGGCTGCAAATATGTTAAGGAGTGTTGTTGTTGTTGCTGTTTGCTC_-_ATGGTTATGGTGAACGCAGTGTCTGCAGCAGGCAAAGCAAAATGCACGAAAAAATGGTACAAGAGATGCTATGGATATCAACATGATTGCCCTGCTCAATGTCCATAT

Fln Alignment:

AllPine_b_rep_c58511___LMVMVNAVSAAGKAKCTKKWYKRCYGYQHDCPAQCPY
Q40862________________VMVMVNAASAVGKAKCTDKWYPRCYGYQYDCPANCPY

SSRs (tot: 1)

Start position	End position	Sequence	Length
76	89	TGT TGT TGT TGT TG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain