SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene204192

Length: 382 nt

UniGene Fasta

>sp_v3.0_unigene204192
AAGTTTGCCGAGACATTCTGCGAGGCGATGGGGAATGATATCGTGTGTGCTGTGTGCTTGAACTGCTTCGAGGAAAAGGAGCATATCAGAGAATTGTGTAATTGCCATCATGTATTTCATAGGAATTGTCTTGATAAGTGGCTTGATCATCGTCAGACGACGTGCCCTCTCTGCAGATCGTTTCTTATGCCAGAGAGAATACCTGATAACCAATTTAGTAAATCGTGGGTTGTAGATCGGATCGCTTATATCTTCAGTGACGATTTAGTGATTTCGTCGCAACAGAGAGATTTTTCATGGTAAATACCGATTGTATATGTCATATCTGTCCATAATAGAATGTGATGGTAGCAGAAGACCCTGAGTCGGTCATGTCTTCTGC

Ace file of the UniGene sp_v3.0_unigene204192

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] emb\|CAB81584.1\| putative protein [Arabidopsis thaliana] dbj\|BAD43130.1\| putative protein [Arabidopsis thaliana] gb\|AEE77792.1\| RING/U-box domain-containing protein [Arabidopsis thaliana]	-	-	1.0e-15	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%

Source	Gene names
Sma3	POPTRDRAFT_566707; POPTRDRAFT_566711; POPTRDRAFT_584601;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G43430.1	RING/U-box superfamily protein chr3:15354758-15355261 REVERSE LENGTH=167	4.0e-21	45%
RefSeq	Arabidopsis thaliana	NP_189929.1	RING/U-box domain-containing protein [Arabidopsis thaliana]	5.0e-21	45%
RefSeq	Populus trichocarpa	XP_002309447.1	predicted protein [Populus trichocarpa]	4.0e-21	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTT7

Fln msg: your sequence is shorter than subject: 101 - 189

Fln protein: KFAETFCEAMGNDIVCAVCLNCFEEKEHIRELCNCHHVFHRNCLDKWLDHRQTTCPLCRSFLMPERIPDNQFSKSWVVDRIAYIFSDDLVISSQQRDFSW*

Protein Length: 102

Fln nts: AAGTTTGCCGAGACATTCTGCGAGGCGATGGGGAATGATATCGTGTGTGCTGTGTGCTTGAACTGCTTCGAGGAAAAGGAGCATATCAGAGAATTGTGTAATTGCCATCATGTATTTCATAGGAATTGTCTTGATAAGTGGCTTGATCATCGTCAGACGACGTGCCCTCTCTGCAGATCGTTTCTTATGCCAGAGAGAATACCTGATAACCAATTTAGTAAATCGTGGGTTGTAGATCGGATCGCTTATATCTTCAGTGACGATTTAGTGATTTCGTCGCAACAGAGAGATTTTTCATGGTAA___ATACCGATTGTATATGTCATATCTGTCCATAATAGAATGTGATGGTAGCAGAAGACCCTGAGTCGGTCATGTCTTCTGC

Fln Alignment:

AllPine_b_rep_c58268___FAETFCEAMGNDIVCAVCLNCFEEKEHIRELCNCHHVFHRNCLDKWLDHRQTTCPLCRSFLMPERIPDN
A9NTT7________________FTDGFVGSDNSHVECAVCLSKFEEGVEIRQL-TCCHLFHRPCLDKWLDHQQITCPLCRSCLISEEAAKN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain