SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene204087

Length: 237 nt

UniGene Fasta

>sp_v3.0_unigene204087
GGATCTGGGGATGACTGTGCTCGTTAGTCAGGTCAATAGGCTTAGGAAGATGAATAAGCCCGTTGTTGGTGTGGGTTGTGCTTCGACTGGTGATACGTCGGCTGCGCTGTCAGCATATTGTGCTGCTGCAGGGATACCTGCTATTGTTTTTCTGCCTGCAAATCGCATCTCGATTGCACAGTTAGTGCAGCCGATTGCCAATGGTGCGTTGGTGCTCAGTCTCGATACTGATTTCGA

Ace file of the UniGene sp_v3.0_unigene204087

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	chloroplast threonine synthase [Medicago sativa]	-	-	1.0e-27	82%
FL-Next	sp=Threonine synthase, chloroplastic; Solanum tuberosum (Potato).	-	-	0.0	91%
Sma3	Threonine synthase	-	-	1.509e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Threonine synthase.	EC:4.2.3.1	-	5.572e-19	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycine, serine and threonine metabolism	00260	5.572e-19	%
Sma3	Vitamin B6 metabolism	00750	5.572e-19	%
Sma3	Metabolic pathways	01100	5.572e-19	%

Source	Gene names
Sma3	At1g72810; At4g29840; CHLREDRAFT_127384; F27B13.80; F3N23.1; GSVIVT00016507001; GSVIVT00032716001; MICPUCDRAFT_45441; MICPUN_60673; OSTLU_37018; Os01g0693800; Os05g0549700; OsI_03360; OsI_20875; OsJ_03101; OsJ_19448; Ot04g01610; P0431H09.7; P0560C03.1; PH

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	threonine synthase activity	GO:0004795	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	threonine biosynthetic process	GO:0009088	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-
Sma3	Threonine synthase	IPR004450	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G29840.1	MTO2, TS Pyridoxal-5'-phosphate-dependent enzyme family protein chr4:14599434-14601014 REVERSE LENGTH=526	2.0e-33	89%
RefSeq	Arabidopsis thaliana	NP_194713.1	threonine synthase 1 [Arabidopsis thaliana]	3.0e-33	89%
RefSeq	Populus trichocarpa	XP_002329027.1	predicted protein [Populus trichocarpa]	3.0e-34	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9MT28

Fln msg: Distance to subject end: 244 aas, your sequence is shorter than subject: 78 - 519

Fln protein: DLGMTVLVSQVNRLRKMNKPVVGVGCASTGDTSAALSAYCAAAGIPAIVFLPANRISIAQLVQPIANGALVLSLDTDF

Protein Length: 79

Fln nts: GGATCTGGGGATGACTGTGCTCGTTAGTCAGGTCAATAGGCTTAGGAAGATGAATAAGCCCGTTGTTGGTGTGGGTTGTGCTTCGACTGGTGATACGTCGGCTGCGCTGTCAGCATATTGTGCTGCTGCAGGGATACCTGCTATTGTTTTTCTGCCTGCAAATCGCATCTCGATTGCACAGTTAGTGCAGCCGATTGCCAATGGTGCGTTGGTGCTCAGTCTCGATACTGATTTCGA

Fln Alignment:

AllPine_b_rep_c58076___DLGMTVLVSQVNRLRKMNKPVVGVGCASTGDTSXXXXXXXXXXGIPAIVFLPANRISIAQLVQPIANGALVLSLDTDF
Q9MT28________________DLGMTVLVSQVNRLRKMHKPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain