SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene203763

Length: 231 nt

UniGene Fasta

>sp_v3.0_unigene203763
ACACTGATTTACCTCTTTGCTCAGCATACCTGAAGAGCAATGATGGGGCTCAGGTTCATGTGCCAACTCTAGCCAAGCAGTACCATATCAGCCTATCAAGGACAGTGGCAGTTAGGGTTCATCAGATAGACTCAATTGTTGCAATGCTTCGTCATAAATTACATAGTCAGAAGCGGTATTGGATAGAATTTGGGAAATGGGAAGTATTTATTAATGATGATCAAACAAGGT

Ace file of the UniGene sp_v3.0_unigene203763

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HVSL domain containing protein	-	-	3.0e-14	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	Gene names
Sma3	At5g51170; GSVIVT00014091001; Os02g0651000; OsI_08295; OsJ_07746; POPTRDRAFT_575515; RCOM_1502620; VITISV_030399;

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Uncharacterised protein family UPF0406	IPR019146	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G51170.1	" unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; O	4.0e-19	62%
RefSeq	Arabidopsis thaliana	NP_001078743.1	uncharacterized protein [Arabidopsis thaliana]	4.0e-19	62%
RefSeq	Populus trichocarpa	XP_002322318.1	predicted protein [Populus trichocarpa]	5.0e-22	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM70

Fln msg: Distance to subject end: 100 aas, your sequence is shorter than subject: 76 - 388

Fln protein: TDLPLCSAYLKSNDGAQVHVPTLAKQYHISLSRTVAVRVHQIDSIVAMLRHKLHSQKRYWIEFGKWEVFINDDQTR

Protein Length: 77

Fln nts: ACACTGATTTACCTCTTTGCTCAGCATACCTGAAGAGCAATGATGGGGCTCAGGTTCATGTGCCAACTCTAGCCAAGCAGTACCATATCAGCCTATCAAGGACAGTGGCAGTTAGGGTTCATCAGATAGACTCAATTGTTGCAATGCTTCGTCATAAATTACATAGTCAGAAGCGGTATTGGATAGAATTTGGGAAATGGGAAGTATTTATTAATGATGATCAAACAAGGT

Fln Alignment:

AllPine_b_rep_c57487___TDLPLCSAYLKSNDGAQVHVPTLAKQYHISLSRTVAVRVHQIDSIVAMLRHKLHSQKRYWIEFGKWEVFINDDQTR
B8LM70________________TGLPLCSAHLKSNDGAKVDARARAKQYHISLSRTVEIRHHQIDSIVSMLRHKLHSQKRYWIEFGKWEVFINDDQTR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
119			33	66	0.997458
121	33			33	0.997752

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain