SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene203694

Length: 447 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene203694 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Autophagy protein 8 n=1 Tax=Acanthamoeba castellanii RepID=B5M496_ACACA	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Autophagy-related protein 8	-	-	1.425e-16	-

Source	Gene names
Sma3	APG8; APG8A; APG8B; APG8C; APG8D; APG8E; APG8F; APG8G; APG8H; APG8I; ATG8; ATG8A; ATG8B; ATG8C; ATG8D; ATG8E; ATG8F; ATG8G; ATG8H; ATG8I; At1g62040; At2g05630; At2g45170; At3g06420; At3g15580; At3g60640; At4g04620; At4g16520; At4g21980; Atg8a; Atg8b; Atg8

Source	GOs	Term	Type	Identity
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	autophagic vacuole	GO:0005776	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	cytoplasmic vesicle	GO:0031410	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	autophagy	GO:0006914	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Autophagy protein Atg8 ubiquitin-like	IPR004241	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G16520.1	ATG8F Ubiquitin-like superfamily protein chr4:9306882-9308113 REVERSE LENGTH=121	65%
RefSeq	Arabidopsis thaliana	NP_178631.1	GABA(A) receptor-associated protein (autophagy-related protein 8) [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002302521.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
11	66		33		0.997452
75			66	33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain