SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene203638

Length: 338 nt

UniGene Fasta

>sp_v3.0_unigene203638
TTTGGGAAGATCAGATGATGCAAATAGCAATGATTCATCTTCATCATCATGTGCAGTTTGTTTGGGGTGTATTGGGGAGGAGGATGAAGTCCGCATTCTTCCCAACTGCAGACACTATTTTCACATTTCTTGCATTGATCGGTGGCTTCTTCCATGTACTGTCAATAACTCTTCCTGCCCTTTGTGCAGAGCCACTGTAATAGGCCTCCACACATTACAAGCAAAATAGAACAAATCGCAACATTACAAGTTCTTGTTGCTCGGAGACGCAAATCCTGAAAAATGGAGGTGTTTCCTCCCCTGTTTTGGGTGCCTGTTTTCCCTGTTCCTCCATTCCT

Ace file of the UniGene sp_v3.0_unigene203638

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 finger protein ATL47 n=2 Tax=Arabidopsis RepID=ATL47_ARATH	-	-	4.0e-11	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G23980.1	RING/U-box superfamily protein chr1:8484879-8485988 REVERSE LENGTH=369	3.0e-15	58%
RefSeq	Arabidopsis thaliana	NP_173809.1	RING-H2 finger protein ATL47 [Arabidopsis thaliana]	3.0e-15	58%
RefSeq	Populus trichocarpa	XP_002324007.1	predicted protein, partial [Populus trichocarpa]	6.0e-14	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1W7

Fln msg: your sequence is shorter than subject: 76 - 198

Fln protein: LGRSDDANSNDSSSSSCAVCLGCIGEEDEVRILPNCRHYFHISCIDRWLLPCTVNNSSCPLCRATVIGLHTLQAK*

Protein Length: 77

Fln nts: TTTGGGAAGATCAGATGATGCAAATAGCAATGATTCATCTTCATCATCATGTGCAGTTTGTTTGGGGTGTATTGGGGAGGAGGATGAAGTCCGCATTCTTCCCAACTGCAGACACTATTTTCACATTTCTTGCATTGATCGGTGGCTTCTTCCATGTACTGTCAATAACTCTTCCTGCCCTTTGTGCAGAGCCACTGTAATAGGCCTCCACACATTACAAGCAAAATAG___AACAAATCGCAACATTACAAGTTCTTGTTGCTCGGAGACGCAAATCCTGAAAAATGGAGGTGTTTCCTCCCCTGTTTTGGGTGCCTGTTTTCCCTGTTCCTCCATTCCT

Fln Alignment:

AllPine_b_rep_c57182___CAVCLGCIGEEDEVRILPNCRHYFHISCIDRWLLPCTVNNSSCPLCRATVIGLHTLQAK
A9P1W7________________CAICLGGIGEEDGVRILPNCRHYFHISCIDRWLLPCTVNNSSCPLCRATVIGLHSSQAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain