SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene203347

Length: 480 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene203347
AATTGGGATGTTCGCATTTCAGGCGGCAAAGAGATCAAATCGCTAGTGGGGCGCTTATGGGCCGTTCACCAACAGCAGCGAGAGGCGTTGGGACCCAACGACGGGGCGTGGATGCGGGCGATATCTTCGTGGAAACGGAAGCGAGCGTAGAGAAAAGAACGCACCAACCATTCCATGCGCAGAGAATTATTGATACTCAGGGCAGAGCAGCGCTCAGGACTGAGAAGCGCTCAGGACAGAGGAGCGCTCAGGACACAATGTCAGGCAGAGGTGTTACAAGGAATCTGAACAGAGGAGTTACACGGAATCTGGGACCTGTGCTCTGATACCATGTCAGGCCAGGGTAACTCCAGAATGAGCAAAAGAAAAACTGATTGATAATTCATTAGCTAACTATCTTTATATACACAAATAAAACGGATCAGTTCATCTTCCTGATGACTGTCCAGTTCACCCATCCGTTTCGGATTAGGTGTCAAC

Ace file of the UniGene sp_v3.0_unigene203347 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site	IPR000283	-	-
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	Molybdopterin oxidoreductase	IPR006656	-	-
Sma3	NADH:ubiquinone oxidoreductase, subunit G	IPR010228	-	-
Sma3	NADH-quinone oxidoreductase, chain G, C-terminal	IPR015405	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMM8

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 37 and 37, Unexpected STOP codon at 3' end. Distance to subject end: 588 aas, your sequence is shorter than subject: 48 - 750

Fln protein: MFAFQAAKRxxSLVGRLWAVHQQQREALGPNDGAWMRAISSWKRKRA*

Protein Length: 49

Fln nts: AATTGGG_-_ATGTTCGCATTTCAGGCGGCAAAGAGAxxxxxxTCGCTAGTGGGGCGCTTATGGGCCGTTCACCAACAGCAGCGAGAGGCGTTGGGACCCAACGACGGGGCGTGGATGCGGGCGATATCTTCGTGGAAACGGAAGCGAGCGTAGAGAAAAGAACGCACCAACCATTCCATGCGCAGAGAATTATTGATACTCAGGGCAGAGCAGCGCTCAGGACTGAGAAGCGCTCAGGACAGAGGAGCGCTCAGGACACAATGTCAGGCAGAGGTGTTACAAGGAATCTGAACAGAGGAGTTACACGGAATCTGGGACCTGTGCTCTGATACCATGTCAGGCCAGGGTAACTCCAGAATGAGCAAAAGAAAAACTGATTGATAATTCATTAGCTAACTATCTTTATATACACAAATAAAACGGATCAGTTCATCTTCCTGATGACTGTCCAGTTCACCCATCCGTTTCGGATTAGGTGTCAAC

Fln Alignment:

AllPine_b_rep_c56479___IGMFAFQAAKRSKSLVGRLWAVHQQQREALGPNDGAWMRAISS
B8LMM8________________IGMLAFQAARRSKSLAGRLWAVQQQQQEALGPNGGAWMRAISS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
126		33		66	0.997459

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain