SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene203345

Length: 200 nt

UniGene Fasta

>sp_v3.0_unigene203345
CTAAGTCTAGGTGCAGTGCGAGATTTGGCAGGCTGACAGGAAGTCTCTCGCTACTGTCCGCACTGTCATACTCCCACATCTCCAACTTGATTGTTGGAGTCACCAAGGGCTTCAAGTATAAGATGCGCATGGTGTACGCTCACTTCCCCATCAGTGTGAACATTGAGAAGAACGGCACTGAGGTCGAAGTGAGAAATTTC

Ace file of the UniGene sp_v3.0_unigene203345

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L9, component of cytosolic 80S ribosome and 60S large subunit n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RVV0_OSTLU	-	-	1.0e-12	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%

Source	Gene names
Sma3	CHLREDRAFT_139831; MICPUCDRAFT_32821; OSTLU_45591; Ot04g01850; RL9; RPL9; THAPSDRAFT_26137;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L6	IPR000702	-	0.0	-
Sma3	Ribosomal protein L6, conserved site-2	IPR002359	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G33140.1	PGY2 Ribosomal protein L6 family chr1:12023360-12024502 FORWARD LENGTH=194	7.0e-14	61%
RefSeq	Arabidopsis thaliana	NP_564418.1	60S ribosomal protein L9-1 [Arabidopsis thaliana]	1.0e-13	61%
RefSeq	Populus trichocarpa	XP_002300532.1	predicted protein, partial [Populus trichocarpa]	1.0e-14	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQT7

Fln msg: Distance to subject end: 72 aas, your sequence is shorter than subject: 66 - 191

Fln protein: KSRCSARFGRLTGSLSLLSALSYSHISNLIVGVTKGFKYKMRMVYAHFPISVNIEKNGTEVEVRNF

Protein Length: 67

Fln nts: CTAAGTCTAGGTGCAGTGCGAGATTTGGCAGGCTGACAGGAAGTCTCTCGCTACTGTCCGCACTGTCATACTCCCACATCTCCAACTTGATTGTTGGAGTCACCAAGGGCTTCAAGTATAAGATGCGCATGGTGTACGCTCACTTCCCCATCAGTGTGAACATTGAGAAGAACGGCACTGAGGTCGAAGTGAGAAATTTC

Fln Alignment:

AllPine_b_rep_c56466___ISNLIVGVTKGFKYKMRMVYAHFPISVNIEKNGT----EVEVRNF
B8LQT7________________INNLIIGVTKGYKYKMRYVYAHFPINVNLEKDKETDQWEVEIRNF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain