SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene203149

Length: 312 nt

UniGene Fasta

>sp_v3.0_unigene203149
ACTATCTGGTTCGCCGATCAGAGTGAGACAAAAGGGAGGGAACACAGGTTGAAAGAAGATATGACTAAAATGCAGAAAGCGTGGTTCTACAAAGAATATGGATCCATAAACGTTTTGGAGTTCGGTGAATTCCCTGTGCCAAAGCCGGGGCCAGGCCAGATTTTAGTTAAAGTCCGAGCTGCCGCGCTGAATCCCGTCGACTTCAAGAAACGGGAGGGCTTATTCAAAACCAACGATTCCGACTTTCCGGCTGTGCCGGGTTGTGATGCAGCTGGAGTGGTAGTGGAAGTTGGCGATGGCGTTTCCAAGTTC

Ace file of the UniGene sp_v3.0_unigene203149

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	quinone oxidoreductase-like protein [Arabidopsis thaliana] sp\|Q9ZUC1.2\|QORL_ARATH RecName: Full=Quinone oxidoreductase-like protein At1g23740, chloroplastic; Flags: Precursor gb\|AAL06488.1\|AF411799_1 At1g23740/F5O8_27 [Arabidopsis thaliana] gb\|AAM16188.1\|	-	-	3.0e-10	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Quinone oxidoreductase-like protein	-	-	5.041e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	NADPH:quinone reductase.	EC:1.6.5.5	-	1.402e-06	-

Source	Gene names
Sma3	At1g23740; F5O8.29; GSVIVT00002699001; GSVIVT00026262001; Haploop; OSJNBb0011E04.125; Os08g0379400; OsI_29063; OsJ_27134; P0709D11.15; PHYPADRAFT_123963; PHYPADRAFT_153994; POPTRDRAFT_808774; QR; RCOM_0528460; RCOM_1612540;

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	dihydropteroate synthase activity	GO:0004156	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	folic acid-containing compound biosynthetic process	GO:0009396	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pterin-binding	IPR000489	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Quinone oxidoreductase/zeta-crystallin, conserved site	IPR002364	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G23740.1	Oxidoreductase, zinc-binding dehydrogenase family protein chr1:8398245-8399656 REVERSE LENGTH=386	5.0e-14	50%
RefSeq	Arabidopsis thaliana	NP_173786.1	quinone oxidoreductase-like protein [Arabidopsis thaliana]	7.0e-14	50%
RefSeq	Populus trichocarpa	XP_002323668.1	predicted protein [Populus trichocarpa]	5.0e-13	53%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLT9

Fln msg: Distance to subject end: 119 aas, your sequence is shorter than subject: 84 - 200

Fln protein: MTKMQKAWFYKEYGSINVLEFGEFPVPKPGPGQILVKVRAAALNPVDFKKREGLFKTNDSDFPAVPGCDAAGVVVEVGDGVSKF

Protein Length: 85

Fln nts: ACTATCTGGTTCGCCGATCAGAGTGAGACAAAAGGGAGGGAACACAGGTTGAAAGAAGAT_-_ATGACTAAAATGCAGAAAGCGTGGTTCTACAAAGAATATGGATCCATAAACGTTTTGGAGTTCGGTGAATTCCCTGTGCCAAAGCCGGGGCCAGGCCAGATTTTAGTTAAAGTCCGAGCTGCCGCGCTGAATCCCGTCGACTTCAAGAAACGGGAGGGCTTATTCAAAACCAACGATTCCGACTTTCCGGCTGTGCCGGGTTGTGATGCAGCTGGAGTGGTAGTGGAAGTTGGCGATGGCGTTTCCAAGTTC

Fln Alignment:

AllPine_b_rep_c56002___MQKAWFYKEYGSINVLEFGEFPVPKPGPGQILVKVRAAALNPVDFKKREGLFKTNDSDFPAVP
A9NLT9________________MQKAWFYNEYGSIDVLQFGEFPVPKPGPGEILLKIRAAALNPVDYKKREGLFRSADCDFPAVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain