SustainPineDB

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Assembly info
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SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene203081

Length: 396 nt

UniGene Fasta

>sp_v3.0_unigene203081
ACAGCAGAGGAAGACTGTGTATTCTGAGAGGAGAGCCTAAGCGGCGAGATCCCTAAGGACGGAGCCGAATACTATCAGCAATGGCGGACGCTAAGGCCGTTACAGTCAGAACTCGCAAGTTCATGACTAACAGGCTTTTATCAAGGAAGCAATTTGCCAAATGTATCTAAGGCCGAACTGAAGGAGAAGCTCGCGAAGCTGTATGAGGTCAGAGATCCGCAGACAATATTTGTATTTGGGTTCAGAACCCAATTCGGAGGTGGAAAATCGTCAGGGTTTGGCTTGATTTATGACAGCTTGGAGCACGCCAAGAAATATGAACCCAAGTACAGGCTTATCAGGAATGGGCTTGCAACGAAGGTAGAAAAATCCAGGAAGCAATTGAAGGAAAGGAAG

Ace file of the UniGene sp_v3.0_unigene203081

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S24 n=2 Tax=Picea sitchensis RepID=A9NKN3_PICSI	-	-	3.0e-40	85%
FL-Next	sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	40S ribosomal protein S24	-	-	0.0	-

Source	Gene names
Sma3	At3g04920; At5g28060; CHLREDRAFT_143072; F15F15.130; GSVIVT00023734001; GSVIVT00031119001; MICPUCDRAFT_60015; MICPUN_92037; OSJNBb0035N08.11; OSTLU_42986; Os01g0723200; Os02g0229000; Os06g0555400; OsI_03571; OsI_06448; OsI_23353; OsJ_03304; OsJ_05968; OsJ

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S24e	IPR001976	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Ribosomal S24e conserved site	IPR018098	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04920.1	Ribosomal protein S24e family protein chr3:1360989-1362065 FORWARD LENGTH=133	2.0e-33	82%
RefSeq	Arabidopsis thaliana	NP_187143.1	40S ribosomal protein S24-1 [Arabidopsis thaliana]	2.0e-33	82%
RefSeq	Populus trichocarpa	XP_002319622.1	predicted protein, partial [Populus trichocarpa]	3.0e-35	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKN3

Fln msg: Separated hits, possible frame ERROR between 155 and 157, Distance to subject end: 22 aas, your sequence is shorter than subject: 106 - 136

Fln protein: MADAKAVTVRTRKFMTNRLLSRKQxxPNVSKAELKEKLAKLYEVRDPQTIFVFGFRTQFGGGKSSGFGLIYDSLEHAKKYEPKYRLIRNGLATKVEKSRKQLKERK

Protein Length: 107

Fln nts: ACAGCAGAGGAAGACTGTGTATTCTGAGAGGAGAGCCTAAGCGGCGAGATCCCTAAGGACGGAGCCGAATACTATCAGCA_-_ATGGCGGACGCTAAGGCCGTTACAGTCAGAACTCGCAAGTTCATGACTAACAGGCTTTTATCAAGGAAGCAATTxxxGCCAAATGTATCTAAGGCCGAACTGAAGGAGAAGCTCGCGAAGCTGTATGAGGTCAGAGATCCGCAGACAATATTTGTATTTGGGTTCAGAACCCAATTCGGAGGTGGAAAATCGTCAGGGTTTGGCTTGATTTATGACAGCTTGGAGCACGCCAAGAAATATGAACCCAAGTACAGGCTTATCAGGAATGGGCTTGCAACGAAGGTAGAAAAATCCAGGAAGCAATTGAAGGAAAGGAAG

Fln Alignment:

AllPine_b_rep_c55854___MADAKAVTVRTRKFMTNRLLSRKQFxPNVSXXXXXXXXXXXYEVRDPQTIFVFGFRTQFGGGKSSGFGLIYDSLEHAKKYEPKYRLIRNGLATKVEKSRKQLKERK
A9NKN3________________MADAKAVTVRTRKFMTNRLLSRKQFxPNVSKAELKEKLAKLYEVRDPQTIFVFGFRTQFGGGKSSGFGLIYDSLEHAKKYEPKYRLIRNGLATKVEKSRKQMKERK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain