SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene202844

Length: 394 nt

UniGene Fasta

>sp_v3.0_unigene202844
CTCTTTTCTCCTCTCTCTGCTGCGATGGGCCGAAGCAGGTACTCCCGTGAGCCAGAAAACCCTGCCAAGAGCGCTAAAGCTCGTGGCTCGAACCTTCGAGTTCACTACAAAAACACTCGTGAGACCGTCATGGCTTTGAGTGGCAAATCTTTGCGTGAGGCTCAACGTTATCTTGGCCAAGTCCAAGAGCACAAAGCTGCCATTCCATTCCGCCGACACACTGGTGGTATTGGCCGACATGCTCAAGCCAAGATCTACAACACCACTCAATGCCGCTGGCCCAAGAAGTCAGTTGATCTTGTTCTTGGTCTGTTGAAGAACCTCGAGAGCAATGCTGAGACCCAAGGATTGAACGTTGATGCTCTTCAGCTTACACACCTCCAAGTTCAACGCG

Ace file of the UniGene sp_v3.0_unigene202844

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L17 n=3 Tax=Caenorhabditis RepID=RL17_CAEEL	-	-	2.0e-35	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	Ribosomal protein L17	-	-	1.266e-10	-

Source	Gene names
Sma3	At1g27400; At1g67430; B1279D09.8; CHLREDRAFT_77517; F17L21.19; GSVIVT00002839001; GSVIVT00002840001; GSVIVT00017930001; MICPUCDRAFT_49699; MICPUN_93345; OJ1770_H02.31; OJ1789_C07.10; OSTLU_32234; Os08g0530200; Os09g0258600; OsI_30009; OsI_30588; OsJ_28046

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L22/L17	IPR001063	-	-
Sma3	Ribosomal protein L22/L17, eukaryotic/archaeal	IPR005721	-	-
Sma3	Peptidase M28	IPR007484	-	-
Sma3	Ribosomal protein L22/L17, conserved site	IPR018260	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G67430.1	Ribosomal protein L22p/L17e family protein chr1:25262209-25263627 FORWARD LENGTH=175	2.0e-38	57%
RefSeq	Arabidopsis thaliana	NP_176910.1	60S ribosomal protein L17-2 [Arabidopsis thaliana]	2.0e-38	57%
RefSeq	Populus trichocarpa	XP_002314532.1	predicted protein, partial [Populus trichocarpa]	6.02558e-44	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT26

Fln msg: Distance to subject end: 61 aas, your sequence is shorter than subject: 123 - 183

Fln protein: MGRSRYSREPENPAKSAKARGSNLRVHYKNTRETVMALSGKSLREAQRYLGQVQEHKAAIPFRRHTGGIGRHAQAKIYNTTQCRWPKKSVDLVLGLLKNLESNAETQGLNVDALQLTHLQVQR

Protein Length: 124

Fln nts: CTCTTTTCTCCTCTCTCTGCTGCG_-_ATGGGCCGAAGCAGGTACTCCCGTGAGCCAGAAAACCCTGCCAAGAGCGCTAAAGCTCGTGGCTCGAACCTTCGAGTTCACTACAAAAACACTCGTGAGACCGTCATGGCTTTGAGTGGCAAATCTTTGCGTGAGGCTCAACGTTATCTTGGCCAAGTCCAAGAGCACAAAGCTGCCATTCCATTCCGCCGACACACTGGTGGTATTGGCCGACATGCTCAAGCCAAGATCTACAACACCACTCAATGCCGCTGGCCCAAGAAGTCAGTTGATCTTGTTCTTGGTCTGTTGAAGAACCTCGAGAGCAATGCTGAGACCCAAGGATTGAACGTTGATGCTCTTCAGCTTACACACCTCCAAGTTCAACGCG

Fln Alignment:

AllPine_b_rep_c55007___RYSREPENPAKSAKARGSNLRVHYKNTRETVMALSGKSLREAQRYLGQVQEHKAAIPFRRHTGGIGRHAQAKIYNTT-QCRWPKKSVDLVLGLLKNLESNAETQGLNVDALQLTHLQVQR
A9NT26________________KYSREPGNPTKSAKARGSDLRVHFKNTRETAQAVKKLSLTKAKRYLEDVIAHKQAIPFRRFCGGVGRTAQAKSRNSNGQGRWPVKSAEFLLGLLKNAESNAEVKGLDVDTLYISHIQVNQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
276		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain