SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene202811

Length: 467 nt

UniGene Fasta

>sp_v3.0_unigene202811
CGAAGGGGAGCTGCAGTTGGCGTTCCGGAAATTCGACGCGAATGGCGACGGTAAGATCTGTTGGTCGGAGCTGGGTATGCTCATGACATCCCTCGGTTCCTCTGTCACCGACGACGAGCTCCAAGCTATGGTGAGCATGGTCGATTCCGACGGCGACGGTTTCATTGATTTCTCAGATTTCGTGGAGCTCAACACTTTCGCTGTGGACGACCCACGGGGGCGCCTTCGGGATCTTCGATTTCGACGGCAACGGGCTCATCTCCGCCGATGAACTTCTCAGGGTTTTCCACAACTTGGGAGAGCGATGTTCCGTGGAAGATTGCCGGAATATGATCGCAGGAGTAGACTCCAACGGCGACGGATACGTGAGCTTCGACGAATTTATTATCATGATGACGGCTTCCGCTTAATCTAGTTAGTCAAGCGGCCTTACACGACACGACACGGCACGAGTGAGTAGGGAGAAG

Ace file of the UniGene sp_v3.0_unigene202811

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable calcium-binding protein CML10 n=3 Tax=Oryza sativa RepID=CML10_ORYSJ	-	-	5.0e-25	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Polcalcin Jun o 2	-	-	2.784e-10	-

Source	Gene names
Sma3	At1g18210; At1g66400; At5g37770; B1147A04.18; CML10; CML18; CML23; CML24; CML27; GSVIVT00017815001; GSVIVT00026362001; GSVIVT00036584001; K22F20.1; LOC_Os01g72100; LOC_Os05g13580; OJ1532_D06.3; Os01g0949500; Os05g0223000; OsI_05196; OsI_18939; OsJ_04761;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to mechanical stimulus	GO:0009612	Biological Process	-
Sma3	response to absence of light	GO:0009646	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to metal ion	GO:0010038	Biological Process	-
Sma3	calcium-mediated signaling	GO:0019722	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-
Sma3	long-day photoperiodism, flowering	GO:0048574	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Recoverin	IPR001125	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Parvalbumin	IPR008080	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G24620.1	EF hand calcium-binding protein family chr1:8723893-8724453 REVERSE LENGTH=186	8.0e-27	57%
RefSeq	Arabidopsis thaliana	NP_173866.1	putative calcium-binding protein CML25 [Arabidopsis thaliana]	1.0e-26	57%
RefSeq	Populus trichocarpa	XP_002314786.1	predicted protein, partial [Populus trichocarpa]	3.0e-26	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNH6

Fln msg: Separated hits, possible frame ERROR between 196 and 222, your sequence is shorter than subject: 137 - 244

Fln protein: EGELQLAFRKFDANGDGKICWSELGMLMTSLGSSVTDDELQAMVSMVDSDGDGFIDFSDFVELNxxxxxxxxxxAFGIFDFDGNGLISADELLRVFHNLGERCSVEDCRNMIAGVDSNGDGYVSFDEFIIMMTASA*

Protein Length: 138

Fln nts: CGAAGGGGAGCTGCAGTTGGCGTTCCGGAAATTCGACGCGAATGGCGACGGTAAGATCTGTTGGTCGGAGCTGGGTATGCTCATGACATCCCTCGGTTCCTCTGTCACCGACGACGAGCTCCAAGCTATGGTGAGCATGGTCGATTCCGACGGCGACGGTTTCATTGATTTCTCAGATTTCGTGGAGCTCAACACxxxxxxxxxxxxxxxxxxxxxxxxxxxCGCCTTCGGGATCTTCGATTTCGACGGCAACGGGCTCATCTCCGCCGATGAACTTCTCAGGGTTTTCCACAACTTGGGAGAGCGATGTTCCGTGGAAGATTGCCGGAATATGATCGCAGGAGTAGACTCCAACGGCGACGGATACGTGAGCTTCGACGAATTTATTATCATGATGACGGCTTCCGCTTAATCTAGTTAGTCAAGCGGCCTTACACGACACGACACGGCACGAGTGAGTAGGGAGAAG

Fln Alignment:

AllPine_b_rep_c54900___ELQLAFRKFDANGDGKICWSELGMLMTSLGSSVTDDELQAMVSMVXXXXXXXXXXXXXVELNTxxxxxxxxxAFGIFDFDGNGLISADELLRVFHNLGERCSVEDCRNMIAGVDSNGDGYVSFDEFIIMMTXXXXXXXXXGL
B8LNH6________________ELEDVFKKFDANGDGRISRSELSDLMKSLGGNVTEEEVGAMVSEADLDGDGYIDLSSFVALNTxxxxxxxxxAFNMFDRDGNGSISPSELHHVLTSLQEHCTIGDCHNMIKDVDSNGDGQVSFDEFMAMMTNTSHNSWTTGL

SNPs (tot: 5)

Position	A %	G %	T %	Probability
459	25	75		0.996473
460	25		75	0.996473
461	75	25		0.99649
462	25	75		0.996473
463	25	75		0.996474

SSRs (tot: 1)

Start position	End position	Sequence	Length
432	446	ACACG ACACG ACACG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain