SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene202643

Length: 458 nt

UniGene Fasta

>sp_v3.0_unigene202643
AAAGTTGGTCTGAGCAGGTTACTAGATTGTTCTTGCACTGTTGTTAGAAGGCCCTTGAGTTCTTATAACTCGCGATCAGATCTCAGCGGAGCAGTGACAGTCTCCAAAGGACCCTGTAACTTCGCAGATGGCAAATAAAACTGTGATGCTGTTGGACATGCATTGCCAAAAATGCAAGAAGGTGGCCTTGCATTGTGTTACAAAAATCGAAGGAATCGATTCGCTCTCTATCGATATGAAGGAGAAAACGCTGACTGTGATCGGAGACGCAGATCCCGTGAGCGTCGCCAATTTGGTGAGAACCAAATTCAGGTGCGCTAAATTGCTCCACGCCGGGCCCCTGCCTGTGCCTCCACCTGAGCCCGAGGAGGAGAAAGCGAGCGAGGAGAATAAGGCCGAAGAGAAGCAGGGTGAAGCTGAGAAACCAAGGAGGAACAGAAAGAGAGAATCCCGAGGAG

Ace file of the UniGene sp_v3.0_unigene202643

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Metal ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9RCH3_RICCO	-	-	8.0e-09	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%

Source	GOs	Term	Type	e value	Identity
Sma3	metal ion binding	GO:0046872	Molecular Function	0.0	-
Sma3	metal ion transport	GO:0030001	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G01490.1	Heavy metal transport/detoxification superfamily protein chr1:180401-182066 REVERSE LENGTH=177	2.0e-11	50%
RefSeq	Arabidopsis thaliana	NP_171656.1	heavy-metal-associated domain-containing protein [Arabidopsis thaliana]	3.0e-11	50%
RefSeq	Populus trichocarpa	XP_002327496.1	predicted protein, partial [Populus trichocarpa]	1.0e-12	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2F5

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 110 - 175

Fln protein: MANKTVMLLDMHCQKCKKVALHCVTKIEGIDSLSIDMKEKTLTVIGDADPVSVANLVRTKFRCAKLLHAGPLPVPPPEPEEEKASEENKAEEKQGEAEKPRRNRKRESRG

Protein Length: 111

Fln nts: AAAGTTGGTCTGAGCAGGTTACTAGATTGTTCTTGCACTGTTGTTAGAAGGCCCTTGAGTTCTTATAACTCGCGATCAGATCTCAGCGGAGCAGTGACAGTCTCCAAAGGACCCTGTAACTTCGCAG_-_ATGGCAAATAAAACTGTGATGCTGTTGGACATGCATTGCCAAAAATGCAAGAAGGTGGCCTTGCATTGTGTTACAAAAATCGAAGGAATCGATTCGCTCTCTATCGATATGAAGGAGAAAACGCTGACTGTGATCGGAGACGCAGATCCCGTGAGCGTCGCCAATTTGGTGAGAACCAAATTCAGGTGCGCTAAATTGCTCCACGCCGGGCCCCTGCCTGTGCCTCCACCTGAGCCCGAGGAGGAGAAAGCGAGCGAGGAGAATAAGGCCGAAGAGAAGCAGGGTGAAGCTGAGAAACCAAGGAGGAACAGAAAGAGAGAATCCCGAGGAG

Fln Alignment:

AllPine_b_rep_c54156___MANKTVMLLDMHCQKCKKVALHCVTKIEGIDSLSIDMKEKTLTVIGDADPVSVANLVRTKFRCAKLL
A9P2F5________________MTNKTVMSLDLRCDKCKKIALHSITKIEGIDSLSIDMKERTLTVIGDADPVGVANMLRTKFRCAKLL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
216	80		20		0.995497
223		80		20	0.995495
242	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain