SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene202596

Length: 521 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene202596
TACGGGGGGGGATAAAAGACAAGATCATAAGTGCAGCAACCAGGTATATGACAGAGGTTCGTAGATTGGCACTGTCACAGGGGCATACTGAACCTGTATATCGTGGCTTCAAGGAGCTAGAAGATATGCTGCTAGGGTCATCCACTTTCTAGTTTGTGCCTATGTTCTAATATGGCCCGGGGGATACACAAGTGAGATCTTGCTGTAATAGGTGACTTTAGAGATTCTTCAAAATGCCTCCACAAGCTTATTGTTTGGTGGATGCACTGGTATGGCATCTTGCACACAATCATCTTTTCCTTGAGAGAAGAGGCAACCTATACAAGTGCTAGCAAAGTGTATAATACATAGGCTATACTTGCAGTGGATGTTATATTTGAATTATGCAAGTGGTTGCGAAACAGAAGGGAAAAAGATTTGAAGAATGAATATATTAATATAACATACTCAATGGGCGAACCCTTTTGAGTTTACAAAATAAGAAGTGTGCATGATGGTATTGTGTTTGAGAAGATATGTAG

Ace file of the UniGene sp_v3.0_unigene202596 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleoporin 155 [Arabidopsis thaliana] gb\|AEE29235.1\| nucleoporin 155 [Arabidopsis thaliana]	-	-	4.0e-07	59%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	65%

Source	Gene names
Sma3	GSVIVT00030587001;

Source	GOs	Term	Type	Identity
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	structural constituent of nuclear pore	GO:0017056	Molecular Function	-
Sma3	nucleocytoplasmic transport	GO:0006913	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleoporin, Nup155-like	IPR004870	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HFD8

Fln msg: your sequence is shorter than subject: 50 - 1496

Fln protein: RGGIKDKIISAATRYMTEVRRLALSQGHTEPVYRGFKELEDMLLGSSTF*

Protein Length: 51

Fln nts: TACGGGGGGGGATAAAAGACAAGATCATAAGTGCAGCAACCAGGTATATGACAGAGGTTCGTAGATTGGCACTGTCACAGGGGCATACTGAACCTGTATATCGTGGCTTCAAGGAGCTAGAAGATATGCTGCTAGGGTCATCCACTTTCTAG___TTTGTGCCTATGTTCTAATATGGCCCGGGGGATACACAAGTGAGATCTTGCTGTAATAGGTGACTTTAGAGATTCTTCAAAATGCCTCCACAAGCTTATTGTTTGGTGGATGCACTGGTATGGCATCTTGCACACAATCATCTTTTCCTTGAGAGAAGAGGCAACCTATACAAGTGCTAGCAAAGTGTATAATACATAGGCTATACTTGCAGTGGATGTTATATTTGAATTATGCAAGTGGTTGCGAAACAGAAGGGAAAAAGATTTGAAGAATGAATATATTAATATAACATACTCAATGGGCGAACCCTTTTGAGTTTACAAAATAAGAAGTGTGCATGATGGTATTGTGTTTGAGAAGATATGTAG

Fln Alignment:

AllPine_b_c53869___GIKDKIISAATRYMTEVRRLALSQGHTEPVYRGFKELEDMLLGSSTF
F6HFD8________________GVRDKITSAANRYMTEVRRLALPQSQTEAVYRGFRELEESLISPFSF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
171	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain