SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene202506

Length: 578 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene202506 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S11 [Cyanophora paradoxa]	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	40S ribosomal protein S11	-	-	4.333e-28	-

Source	Gene names
Sma3	At3g48930; At4g30800; At5g23740; CHLREDRAFT_180130; EMB1080; F6I18.290; GSVIVT00005647001; GSVIVT00032736001; MICPUCDRAFT_33883; MICPUN_81184; MRO11.22; OJ1112_E08.122; OJ1112_E08.123; OJ1773_H01.103; OJ1773_H01.104; OSIGBa0112M24.1; OSJNBa0070C17.19; OSJ

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S17	IPR000266	-	-
Sma3	Protein of unknown function DUF707	IPR007877	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G30800.1	Nucleic acid-binding, OB-fold-like protein chr4:15001216-15002392 FORWARD LENGTH=159	64%
RefSeq	Arabidopsis thaliana	NP_194809.1	40S ribosomal protein S11-2 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002301243.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
118	50		50		1.0
160	50		50		1.0
163	50		50		1.0
187	50	50			1.0
189		42	57		1.0
190	57		42		1.0
214	85		14		0.993533
253	37		62		1.0
265		37	62		1.0
277	57		42		1.0
311	57		42		1.0
312		57		42	1.0
319	37		62		1.0
337	57		42		1.0
357		42		57	1.0
421	57		42		1.0
439	66		33		1.0
444		40	60		1.0
466		60	40		1.0
467			40	60	1.0
475		40	60		1.0
481	60		40		1.0
502	50		50		1.0
532		50	50		1.0
533			50	50	1.0
534		50	50		1.0
547	50			50	1.0
554	50		50		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
75	86	TCT TCT TCT TCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain