SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene202354

Length: 265 nt

UniGene Fasta

>sp_v3.0_unigene202354
CAATATTTTGTTGTAGATATTTGGTGGCGAAGCTATGGTGCAAGGGCACCAAATTTGCAAAAATTGGCCATAAGAATCTTGAGTCAAACATGTAGCTCTTCAGGGTGTGAGCGCAATTGGAGTGTATTTGAGAAAATACACGCAAAAAAGCGCAACAGGTATAACTTTGAGCTCCAGCCTTCAGTTGAGCAATTACACTTATTGTAATTTAAAATTTTTAATTTATGACCCTCAAGTGTCAAGAGTCAAGAGTCAAGACTCATTA

Ace file of the UniGene sp_v3.0_unigene202354

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH	-	-	2.0e-15	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	HAT family dimerisation domain containing protein	-	-	1.04e-10	-

Source	Gene names
Sma3	GSVIVT00000858001; GSVIVT00001200001; GSVIVT00002113001; GSVIVT00002367001; GSVIVT00005187001; GSVIVT00006112001; GSVIVT00010659001; GSVIVT00012114001; GSVIVT00013610001; GSVIVT00016792001; GSVIVT00017198001; GSVIVT00019252001; GSVIVT00025733001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G33406.1	hAT dimerisation domain-containing protein / transposase-related chr5:12676126-12678403 REVERSE LENGTH=509	1.0e-16	60%
RefSeq	Arabidopsis thaliana	NP_680299.4	hAT family dimerization domain-containing protein [Arabidopsis thaliana]	2.0e-16	60%
RefSeq	Populus trichocarpa	XP_002311919.1	predicted protein [Populus trichocarpa]	6.0e-13	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8W4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 137 aas, your sequence is shorter than subject: 69 - 478

Fln protein: QYFVVDIWWRSYGARAPNLQKLAIRILSQTCSSSGCERNWSVFEKIHAKKRNRYNFELQPSVEQLHLL*

Protein Length: 70

Fln nts: CAATATTTTGTTGTAGATATTTGGTGGCGAAGCTATGGTGCAAGGGCACCAAATTTGCAAAAATTGGCCATAAGAATCTTGAGTCAAACATGTAGCTCTTCAGGGTGTGAGCGCAATTGGAGTGTATTTGAGAAAATACACGCAAAAAAGCGCAACAGGTATAACTTTGAGCTCCAGCCTTCAGTTGAGCAATTACACTTATTGTAATTTAAAATTTTTAATTTATGACCCTCAAGTGTCAAGAGTCAAGAGTCAAGACTCATTA

Fln Alignment:

AllPine_b_rep_c51579___DIWWRSYGARAPNLQKLAIRILSQTCSSSGCERNWSVFEKIHAKKRNR
D5A8W4________________DTWWENYGATTPILQKMAIRVLSQTCSSSGCERNWSVFEKIHTKKRNR

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
29		14	85		0.993533
32	14		85		0.993533
47		71		28	1.0
51	14	71		14	0.984337
53	85	14			0.993541
62	71		28		1.0
69	14		85		0.993533
71		81		18	0.999994
75	75	25			1.0
107	16		83		0.999991
116	25	66		8	1.0
128	90	10			0.90298
132	20		80		0.999996
144	14		71	14	0.984337
146	85	14			0.993541
152	14		85		0.993533
153	16	66		16	0.988813
154	14		85		0.993533
156	85	14			0.993533
158		71		28	1.0
160	28		71		1.0
167		85		14	0.993533
173	28		71		1.0
177		85		14	0.993533
178	16	66	16		0.988813
185		85		14	0.993533
196	14			85	0.993533
197	14			85	0.993533
201		85		14	0.993533
205		28		71	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
238	258	GTCAAGA GTCAAGA GTCAAGA	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain