SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene202271

Length: 394 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene202271
AGTTATATTGCCCATGCCATGATATGATATGTAGAGGTAAGGGTTCTGCGGCTAATTAAGTTTAGGGCAGAGATGGAATTGAAATTTGCCAAGTTTGGGAAGAGCTTGCTGATCTTTTGGCGTGGGGGGAATTAAGCGGGATGGGAAGTTGTGCAAAGAAAAATAGGACAAGCTCATTGCAGAGTTCAAAGATGTGAGCAATGGCAAGAGGGACAAGAGCGAGAGCCCTTATTAGAACTCATCGCCACAATGGGCACCGACTGCTCTGCTGAAGCAGGATAGGGACAAGGACAGGAACTAGAGAGACCAGAGCAGCAATGCGGTAACCATGCTCTCAGAAACCTTTCTAATGTCGATTTCAGGAGAATGGTCATGGAAACCCCTCGTCGTGTCT

Ace file of the UniGene sp_v3.0_unigene202271 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%

Source	Gene names
Sma3	PHYPADRAFT_161039;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SANT/Myb domain	IPR001005	-	0.0	-
Sma3	Myb-like domain	IPR017877	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRE1

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon is far from subject stop. Distance to subject end: 17 aas, your sequence is shorter than subject: 78 - 378

Fln protein: VILPMP*YDM*R*GFCG*LSLGQRWN*NLPSLGRAC*SFGVGGIKRDGKLCKEK*DKLIAEFKDVSNGKRDKSESPY*

Protein Length: 79

Fln nts: AGTTATATTGCCCATGCCATGATATGATATGTAGAGGTAAGGGTTCTGCGGCTAATTAAGTTTAGGGCAGAGATGGAATTGAAATTTGCCAAGTTTGGGAAGAGCTTGCTGATCTTTTGGCGTGGGGGGAATTAAGCGGGATGGGAAGTTGTGCAAAGAAAAATAGGACAAGCTCATTGCAGAGTTCAAAGATGTGAGCAATGGCAAGAGGGACAAGAGCGAGAGCCCTTATTAG___AACTCATCGCCACAATGGGCACCGACTGCTCTGCTGAAGCAGGATAGGGACAAGGACAGGAACTAGAGAGACCAGAGCAGCAATGCGGTAACCATGCTCTCAGAAACCTTTCTAATGTCGATTTCAGGAGAATGGTCATGGAAACCCCTCGTCGTGTCT

Fln Alignment:

AllPine_b_rep_c49748___GVGGIKRDGKLCKEK*DKLIAEFKDVSNGKRDKSESPY
A9NRE1________________GAEGIKRDGKQCREKWDKLMAEFKDVSDGKRDRSESPY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain