SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene202145

Length: 1237 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene202145

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Short chain alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T6C0_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein chr3:19173622-19174667 REVERSE LENGTH=303	54%
RefSeq	Arabidopsis thaliana	NP_190736.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002323034.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMZ3

Fln msg:

Fln protein: MSNEEVNEAAVCAANLSFKGSGPRLEGKVAIVTGGAAGIGEAIVRLFIKHGAKVVIADIADEAGRTLAESLSPAATFLHCDVSKEEDIRAAVDLAMEKHGQLDIMYNNAGINDPVMVKGVAEYEMEQFDRVMSVNVRGVMLGIKHAARVMIPRKKGCIISTGSVAGIMGGSRFAYTASKHAVIGLTKNGAAELGKFGIRVNAVSPYALATALTVQNFKQGDSTSEEDMATAEAFYNRFANLQGTTLKPEDVAEAGLYLASDEAKYVSGHNLVVDGGFSVTNHSWRLYR*

Protein Length: 290

Fln nts: CTTATTAATTTTTGCATCTGAGAAGACTCCCCACATGCTAAACTGGTTAACCAATTTGACTGTGCAGCG_-_ATGTCTAACGAAGAGGTTAATGAAGCTGCTGTCTGTGCTGCCAATCTGAGCTTTAAGGGATCAGGGCCACGATTGGAGGGCAAGGTCGCAATAGTAACTGGGGGAGCAGCGGGCATCGGAGAAGCCATCGTTCGGCTCTTCATAAAGCACGGAGCCAAAGTCGTAATCGCAGACATTGCAGACGAAGCCGGGAGAACACTTGCAGAATCCCTTTCCCCTGCGGCCACTTTCCTGCACTGCGATGTGAGCAAAGAAGAAGACATCAGGGCTGCGGTGGATTTGGCCATGGAGAAACACGGGCAGCTCGATATCATGTATAACAACGCTGGAATTAACGATCCAGTTATGGTTAAGGGCGTAGCAGAGTACGAAATGGAGCAATTCGACCGAGTTATGAGCGTAAATGTAAGAGGGGTAATGCTGGGCATTAAGCATGCGGCCCGCGTAATGATCCCGAGGAAGAAGGGCTGCATAATCTCGACAGGCAGCGTTGCAGGGATCATGGGAGGATCTCGATTCGCGTACACGGCCTCCAAACATGCAGTGATAGGGCTGACTAAGAATGGAGCAGCCGAGCTTGGGAAATTTGGGATCAGAGTCAATGCTGTATCTCCTTATGCCTTGGCCACGGCTCTCACAGTCCAGAACTTCAAACAAGGGGATTCCACCTCAGAAGAGGATATGGCCACCGCAGAGGCCTTCTATAACCGTTTTGCCAATTTACAGGGAACAACGCTTAAACCAGAGGATGTTGCAGAGGCAGGGTTGTACTTGGCGAGTGATGAGGCTAAATATGTTAGCGGGCATAACCTTGTAGTGGATGGTGGATTCTCAGTTACTAATCACTCCTGGAGGTTATACCGATGA___TGGTTGTTTATGCAAATTCTGCTCACCCATGAGATGCTAGCACGAGGATTGTGGTAATTCCTCTGGTTCTCATTTTCAAACTCTCCCTTTTATGAGATTAGAACCCAGGATCCGGTGGGTACTAAATTTCACATAAACTAATTCTCCCACTCTTAGTGGTTGATATAATAATATCAGCTTATCTTATGATTTGCTTGTTCCATTTTTTTACCACTTGTTATATTCTGTAATGTTGGATTAGTTAGTTTGTGTGGGATTTAATTTTTGTGTGGAGTGTAGTTTCTGTTAAATTTCAAAATGG

Fln Alignment:

AllPine_b_rep_c48779___LSFKGSGPRLEGKXXXXXXXXXXXXXXXXRLFIKHGAKVVIADIADEAGRTLAESLSPAATFLHCDVSKEEDIRAAVDLAMEKHGQLDIMYNNAGINDPVMVKGVAEYEMEQFDRVMSVNVRGVMLGIKHAARVMIPRKKGCIISTGSVAGIMGGSRFAYTASKHAVIGLTKNGAAELGKFGIRVNAVSPYALATALTVQNFKQGDSTSEE-DMATAEAFYNRFANLQGTTLKPEDVAEAGLYLASDEAKYVSGHNLVVDGGFSVTNHSWRLYR
A9NMZ3________________LSFNGSERRLESKVAIITGGAAGIGEAIVRLFTKHGAKVIIADIADEAGRTLAESLSPPATYLHCDVSKEQDISAAVDLAMEKHGQLDIMYNNAGINDSVMVKGVAEYDMEQFDRVMSVNVRGVMLGIKHAARVMIPRKKGCIISTGSVAGILGGARYSYTASKHAVIGLTKNGAAELGKFGIRVNAVSPYALVTALTVQNFRQGDSNSEEAAMATAEAFYNSFANLQGTTLKAKDVAEAGLYLASDEAKYVSGHNLVVDGGFSVANHSWRLYR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
553	66		33		0.997452
682	85	14			0.993533
1130	85		14		0.993533
1141			20	80	0.995493
1172			33	66	0.997453

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain