SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene201953

Length: 608 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene201953 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gibberellin regulated protein [Medicago truncatula] gb\|ACJ86188.1\| unknown [Medicago truncatula]	-	-	7.0e-20	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	GAST1 protein, putative	-	-	2.032e-13	-

Source	Gene names
Sma3	At2g14900; At5g59845; At5g59845/MMN10.7; GIR1; GSVIVT00007725001; GSVIVT00019618001; LOC_Os03g14550; MtrDRAFT_AC158501g15v2; OsI_10763; OsJ_10147; POPTRDRAFT_549969; POPTRDRAFT_592034; POPTRDRAFT_649651; POPTRDRAFT_838545; RCOM_0810460; RCOM_1588210; SN1;

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	0.0	-
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G14900.1	Gibberellin-regulated family protein chr2:6404210-6405043 FORWARD LENGTH=108	1.0e-23	61%
RefSeq	Arabidopsis thaliana	NP_179096.1	gibberellin-regulated protein [Arabidopsis thaliana]	2.0e-23	61%
RefSeq	Populus trichocarpa	XP_002313889.1	predicted protein [Populus trichocarpa]	3.0e-27	66%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
490	33		66		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain