SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene201910

Length: 229 nt

UniGene Fasta

>sp_v3.0_unigene201910
ACTGGGGTTGTTAATGCAAATAAGATTTCTGCTTTGGCATTGAGGAACTTTAGAGGTTTGAATTGTGTGCACGGCCTAGTTGTTGTTCAACAGATTATATGATTCAAAAGCTCGGAGTTGAAGAGAGCACAGTCCGAGACTATAACAAAATGTTGTTTGAAACTTATGGAACAAGCATGGCTGGGCTCAGGGCAGTTGGCTATGAATTTGACTATGACGAGTACCACAG

Ace file of the UniGene sp_v3.0_unigene201910

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative ripening-related protein n=1 Tax=Vitis vinifera RepID=Q9M4H5_VITVI	-	-	2.0e-11	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	-
Sma3	Pyrimidine 5-nucleotidase	IPR010237	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G59490.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein chr5:23982922-23984419 REVERSE LENGTH=266	3.0e-15	62%
RefSeq	Arabidopsis thaliana	NP_200757.1	haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]	5.0e-15	62%
RefSeq	Populus trichocarpa	XP_002309065.1	predicted protein [Populus trichocarpa]	5.0e-16	60%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NL51

Fln msg: Distance to subject end: 187 aas, atg_distance in limit (1-15): atg_distance = 14, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 43 - 276

Fln protein: MIQKLGVEESTVRDYNKMLFETYGTSMAGLRAVGYEFDYDEYH

Protein Length: 44

Fln nts: ACTGGGGTTGTTAATGCAAATAAGATTTCTGCTTTGGCATTGAGGAACTTTAGAGGTTTGAATTGTGTGCACGGCCTAGTTGTTGTTCAACAGATTAT_-_ATGATTCAAAAGCTCGGAGTTGAAGAGAGCACAGTCCGAGACTATAACAAAATGTTGTTTGAAACTTATGGAACAAGCATGGCTGGGCTCAGGGCAGTTGGCTATGAATTTGACTATGACGAGTACCACAG

Fln Alignment:

AllPine_b_c45714___DYMIQKLGVEESTVRDYNKMLFETYGTSMAGLRAVGYEFDYDEYH
A9NL51________________DYVNQKLGVEKSRVPDLSRELYKTYGTTMAGLRAIGYEFDYDDYH

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
131		66	33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain