SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene201251

Length: 134 nt

UniGene Fasta

>sp_v3.0_unigene201251
TTCACTTTTGACTCTGTGTTTGATAGCCTGACTGTAGTTATGCTAATTGTGGTTACATTTGTAAGTAGCTTGGTCCATCTTTATTCTATTTCATATATGTCCGAGGATCCACATAGCCCTCGATTTATGTGTTA

Ace file of the UniGene sp_v3.0_unigene201251

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH dehydrogenase subunit 5 (Fragment) n=5 Tax=core eudicotyledons RepID=E3TBN8_VITVI	-	-	1.0e-13	94%
FL-Next	sp=NADH-ubiquinone oxidoreductase chain 5; berteroana). Mitochondrion.	-	-	0.0	97%
Sma3	NADH-ubiquinone oxidoreductase chain 5	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	4.361e-36	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		4.361e-36	%
Sma3	Metabolic pathways	01100		4.361e-36	%

Source	Gene names
Sma3	HAM_006; MicpuC_mit40; MicpuN_mit25; NAD5; ND5; OtMtg00360; POPTRDRAFT_812198; nad5; nadh dehydrogenase subunit 5; nd5; orf399;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	mitochondrial respiratory chain	GO:0005746	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	ATP synthesis coupled electron transport	GO:0042773	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal	IPR001516	-	-
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase	IPR001750	-	-
Sma3		IPR003916	-	-
Sma3	NADH-plastoquinone oxidoreductase, chain 5	IPR003945	-	-
Sma3	NADH dehydrogenase subunit 5, C-terminal	IPR010934	-	-
Sma3	NADH-plastoquinone oxidoreductase, chain 5 subgroup	IPR018393	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00665.1	NAD5B, NAD5.2, NAD5 NADH dehydrogenase 5B chrM:190740-190761 REVERSE LENGTH=669	7.0e-17	89%
RefSeq	Arabidopsis thaliana	NP_085478.1	NADH dehydrogenase subunit 5 (mitochondrion) [Arabidopsis thaliana]	9.0e-17	89%
RefSeq	Populus trichocarpa	XP_002333105.1	predicted protein [Populus trichocarpa]	3.0e-18	97%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P10330

Fln msg: Distance to subject end: 554 aas, your sequence is shorter than subject: 44 - 670

Fln protein: FTFDSVFDSLTVVMLIVVTFVSSLVHLYSISYMSEDPHSPRFMC

Protein Length: 45

Fln nts: TTCACTTTTGACTCTGTGTTTGATAGCCTGACTGTAGTTATGCTAATTGTGGTTACATTTGTAAGTAGCTTGGTCCATCTTTATTCTATTTCATATATGTCCGAGGATCCACATAGCCCTCGATTTATGTGTTA

Fln Alignment:

AllPine_b_c44539___VFDSLTVVMLIVVTFVSSLVHLYSISYMSEDPHSPRFMC
P10330________________VFDSLTVVMLIVVTFISSLVHLYSISYMSEDPHSPRFMC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain