SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene201246

Length: 560 nt

UniGene Fasta

>sp_v3.0_unigene201246
TGAGAAGCAATTCGAAGTATGGGACTTGGTCTTCTTGAGGGTTTAGCCGTATCGGCAGTCTTCACTCAAACAGAAGGGAGCCGAGAAGCTCAAACCCCGCTTCTATGGACAGTATAGTGTCACTCGAAGAGTGGAGCACATAGCATATGAGCTGGACCTACCCCCAAGGAGCCGGATGTACAACATCTTTCATGTGTCTTGCCTGAAAAAGGCACTAGGACAGCAGGTTACAGCAGCTATAGAGTTACCCCCTATGGATGATGAGGGGCATTTGGTTCTAGAACTAGAGGCCATTTTGGATACCTAGGAGAGGCATTTGAGAAACAAGGTATCAAAATAAGGTCCCTCAATTCTCAAACATGCCACTAAAAGATCTCTTGCCAAGGTTAGGCCTTAAAAAGGAATTTCAAAAGGCCTTCAAGTTTGGCAGGAGTTCAATAGGCCTTTATGTAGGGCAACAGGTGCATTTGGTCTGTGGTATGGATTGCTTCTACAAATGCACTTAATCATCAAATAACTATTAAGGGAAGCTGGGGTGACTAACCCACAGTGAGATATTC

Ace file of the UniGene sp_v3.0_unigene201246

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	1.0e-20	49%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	49%

Source	Gene names
Sma3	VITISV_014148;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: A5ASY8

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 71 aas, putative chimeric sequence, your sequence is shorter than subject: 102 - 1384

Fln protein: EKQFEVWDLVFLRV*PYRQSSLKQKGAEKLKPRFYGQYSVTRRVEHIAYELDLPPRSRMYNIFHVSCLKKALGQQVTAAIELPPMDDEGHLVLELEAILDT*

Protein Length: 103

Fln nts: TGAGAAGCAATTCGAAGTATGGGACTTGGTCTTCTTGAGGGTTTAGCCGTATCGGCAGTCTTCACTCAAACAGAAGGGAGCCGAGAAGCTCAAACCCCGCTTCTATGGACAGTATAGTGTCACTCGAAGAGTGGAGCACATAGCATATGAGCTGGACCTACCCCCAAGGAGCCGGATGTACAACATCTTTCATGTGTCTTGCCTGAAAAAGGCACTAGGACAGCAGGTTACAGCAGCTATAGAGTTACCCCCTATGGATGATGAGGGGCATTTGGTTCTAGAACTAGAGGCCATTTTGGATACCTAG___GAGAGGCATTTGAGAAACAAGGTATCAAAATAAGGTCCCTCAATTCTCAAACATGCCACTAAAAGATCTCTTGCCAAGGTTAGGCCTTAAAAAGGAATTTCAAAAGGCCTTCAAGTTTGGCAGGAGTTCAATAGGCCTTTATGTAGGGCAACAGGTGCATTTGGTCTGTGGTATGGATTGCTTCTACAAATGCACTTAATCATCAAATAACTATTAAGGGAAGCTGGGGTGACTAACCCACAGTGAGATATTC

Fln Alignment:

AllPine_b_c44527___QFEVWDLVFLRV*PYRQSSLKQKGAEKLKPRFYGQYSVTRRVEHIAYELDLPPRSRMYNIFHVSCLKKALGQQVTAAIELPPMDDEGHLVLELEAILDT
A5ASY8________________EYQVGDMVFLKLQPYRQQSVFCXASQKLASRFYGPYQIEQRIGKVAYKLNLPEGSKIHPIFHVSLLKKKLGEPNNTTVELPLTDDEGEIVLEPEGILDT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain