SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene201110

Length: 381 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene201110
GAATATTGTGCAAGAGCTAGTGGACAAGGAGAAGCTTAGTGATGCCTTGCTCGAGATCGGTGAAGCTTACTACAATCTCTGCAAGTATGATAAAGCAAAAAAGTGGTTTACCAAAAGTTGGATAGTAAGCAAATCGATTGGCAACATCGAAGGTCAAGCAATTGCCAAAATCAATCTTGGTAATGTACTTGACTCAACTGGTGAATGGGCTGAAGCACTGGAGGCATATCAAGAGGGTTATAAGACAGCTGTTCAGGGGAAGGTACTCTCTTCACAGCTCACTGCTCTACAGAATATGCACTATAGTTACATGTTACGTTTCGATAATCTTGAAGATGCAAGGAAACTGGAAGCTGATATTGAAAGTTTGAAGAAACTAGT

Ace file of the UniGene sp_v3.0_unigene201110 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Protein TONSOKU; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%

Source	Gene names
Sma3	At3g18730; BRU1; GSVIVT00034860001; MGOUN3; MVE11.9; NtTSK; OJ1311_D08.35; OJ1715_H01.15; Os02g0784100; OsI_09189; OsJ_08626; OsJ_08632; POPTRDRAFT_763986; RCOM_1457540; TSK; VITISV_008899;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ribonuclease H activity	GO:0004523	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	G2/M transition of mitotic cell cycle	GO:0000086	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Ribonuclease H domain	IPR002156	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G18730.1	TSK, MGO3, BRU1 tetratricopeptide repeat (TPR)-containing protein chr3:6446062-6453045 REVERSE LENGTH=1311	3.0e-36	50%
RefSeq	Arabidopsis thaliana	NP_188503.2	protein BRUSHY 1 [Arabidopsis thaliana]	4.0e-36	50%
RefSeq	Populus trichocarpa	XP_002309890.1	predicted protein [Populus trichocarpa]	6.00036e-42	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6Q4D0

Fln msg: Distance to subject end: 819 aas, your sequence is shorter than subject: 126 - 1311

Fln protein: NIVQELVDKEKLSDALLEIGEAYYNLCKYDKAKKWFTKSWIVSKSIGNIEGQAIAKINLGNVLDSTGEWAEALEAYQEGYKTAVQGKVLSSQLTALQNMHYSYMLRFDNLEDARKLEADIESLKKL

Protein Length: 127

Fln nts: GAATATTGTGCAAGAGCTAGTGGACAAGGAGAAGCTTAGTGATGCCTTGCTCGAGATCGGTGAAGCTTACTACAATCTCTGCAAGTATGATAAAGCAAAAAAGTGGTTTACCAAAAGTTGGATAGTAAGCAAATCGATTGGCAACATCGAAGGTCAAGCAATTGCCAAAATCAATCTTGGTAATGTACTTGACTCAACTGGTGAATGGGCTGAAGCACTGGAGGCATATCAAGAGGGTTATAAGACAGCTGTTCAGGGGAAGGTACTCTCTTCACAGCTCACTGCTCTACAGAATATGCACTATAGTTACATGTTACGTTTCGATAATCTTGAAGATGCAAGGAAACTGGAAGCTGATATTGAAAGTTTGAAGAAACTAGT

Fln Alignment:

AllPine_b_c44285___IVQELVDKEKLSDALLEIGEAYYNLCKYDKAKKWFTKSWIVSKSIGNIEGQAIAKINLGNVLDSTGEWAEALEAYQEGYKTAVQGKVLSSQLTALQNMHYSYMLRFDNLEDARKLEADIESLKK
Q6Q4D0________________ISDELCDKEKLSDAFMIVGESYQNLRNFRKSLKWFIRSYEGHEAIGNLEGQALAKINIGNGLDCIGEWTGALQAYEEGYRIALKANLPSIQLSALEDIHYIHMMRFGNAQKASELKETIQNLKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain