SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene201036

Length: 228 nt

UniGene Fasta

>sp_v3.0_unigene201036
TGAGATTAGTTGATGAAGGATTGAGAGCAAGGTTCAAAGCCGCCTATTCAGATGTGGAGGTGCAGCCTCCTTCTCCTACAAGACCTGCTCCCGTGTCTGATGGAGAGGCAACTGCACCAGCAAACAACCGTTTTACCGGAATGGAAGCCAAGGTTACACCTGAACACATGCCTATGAGAGGATCAGAAAATTATGCATCAGAGGAGAAGTTTGTAGCTAAAGACGCTG

Ace file of the UniGene sp_v3.0_unigene201036

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Putative N6-adenosine-methyltransferase MT-A70-like gb\|ABD28511.1\| MT-A70 [Medicago truncatula]	-	-	2.0e-05	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	Gene names
Sma3	LOC_Os02g45110; OJ1197_E09.7; OJ1493_H11.20; Os02g0672600; OsI_08434; OsJ_07897;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	GO:0016422	Molecular Function	-
Sma3	nucleobase-containing compound metabolic process	GO:0006139	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	0.0	-
Sma3	MT-A70	IPR007757	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPF6

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 75 - 804

Fln protein: RLVDEGLRARFKAAYSDVEVQPPSPTRPAPVSDGEATAPANNRFTGMEAKVTPEHMPMRGSENYASEEKFVAKDA

Protein Length: 76

Fln nts: TGAGATTAGTTGATGAAGGATTGAGAGCAAGGTTCAAAGCCGCCTATTCAGATGTGGAGGTGCAGCCTCCTTCTCCTACAAGACCTGCTCCCGTGTCTGATGGAGAGGCAACTGCACCAGCAAACAACCGTTTTACCGGAATGGAAGCCAAGGTTACACCTGAACACATGCCTATGAGAGGATCAGAAAATTATGCATCAGAGGAGAAGTTTGTAGCTAAAGACGCTG

Fln Alignment:

AllPine_b_c44157___RLVDEGLRARFKAAYSDVEVQPPSPTRPAPVSDGEATAPANNRFTGMEAKVTPEHMPMRGSENYASEEKFVAKDA
B8LPF6________________RLVDEGLRARFKAAYSDVEVQPASPPRAAPVSDGEATAQAKNRFSGMEAKVTPEHMPMTGSENYASEEKFVAKDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain