SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene200922

Length: 357 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene200922
CTTTTGACCATTCCACAGATAATGGCGGCAGGGATTTGCACCGCAGGAACTCTGTTGGTCCTGGGAGTCACAGGCCTTATGGGCCTTATTTATAGGATCATTCCTCTTCCAGTGATCCGGGCTGTGCAGCTATCACAGGGACTGTCCTTTGCATTCACTGCAGTGAAATACATAAGGAACAATCAGGACTTGGCGAAGAATAAGTCTGGGAATGCAAGGCCTTGGTTGGGTTTGGATGGACTTCTGTTGGCTCTGATCTGTCTGTGCTTCATTGTGCTTGTCAATGGCTCTGGTGATGATTCAAGACAAAGGATTGAAGAGAATCCAAATGCTTCAATCCCTTCAAGTGTTGCTGCG

Ace file of the UniGene sp_v3.0_unigene200922 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to putative sulfate transporter n=1 Tax=Vitis vinifera RepID=UPI0001982FFB	-	-	7.0e-18	48%
FL-Next	sp=Molybdate transporter 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	63%
Sma3	Putative sulfate transporter	-	-	2.572e-14	-

Source	Gene names
Sma3	AT1G80310; At1g80310; At2g25680; B1147B12.16; GSVIVT00032544001; GSVIVT00032545001; GSVIVT00034528001; Os01g0645900; OsI_03055; OsI_27474; OsI_27478; OsJ_02808; OsJ_25721; P0038D11.6; P0707D10.33; PHYPADRAFT_151399; PHYPADRAFT_204321; POPTRDRAFT_1081544;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	molybdate ion transmembrane transporter activity	GO:0015098	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	molybdate ion transport	GO:0015689	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Sulphate transporter	IPR011547	-	0.0	-
Sma3	WD40 repeat, conserved site	IPR019775	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G25680.1	MOT1 molybdate transporter 1 chr2:10933167-10934537 REVERSE LENGTH=456	4.0e-18	63%
RefSeq	Arabidopsis thaliana	NP_180139.1	molybdate transporter 1 [Arabidopsis thaliana]	5.0e-18	63%
RefSeq	Populus trichocarpa	XP_002309582.1	predicted protein [Populus trichocarpa]	2.0e-20	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SL95

Fln msg: Distance to subject end: 234 aas, your sequence is shorter than subject: 119 - 456

Fln protein: LLTIPQIMAAGICTAGTLLVLGVTGLMGLIYRIIPLPVIRAVQLSQGLSFAFTAVKYIRNNQDLAKNKSGNARPWLGLDGLLLALICLCFIVLVNGSGDDSRQRIEENPNASIPSSVAA

Protein Length: 120

Fln nts: CTTTTGACCATTCCACAGATAATGGCGGCAGGGATTTGCACCGCAGGAACTCTGTTGGTCCTGGGAGTCACAGGCCTTATGGGCCTTATTTATAGGATCATTCCTCTTCCAGTGATCCGGGCTGTGCAGCTATCACAGGGACTGTCCTTTGCATTCACTGCAGTGAAATACATAAGGAACAATCAGGACTTGGCGAAGAATAAGTCTGGGAATGCAAGGCCTTGGTTGGGTTTGGATGGACTTCTGTTGGCTCTGATCTGTCTGTGCTTCATTGTGCTTGTCAATGGCTCTGGTGATGATTCAAGACAAAGGATTGAAGAGAATCCAAATGCTTCAATCCCTTCAAGTGTTGCTGCG

Fln Alignment:

AllPine_b_c43948___IPQIMAAGICTAXXXXXXXXXXXXXLIYRIIPLPVIRAVQLSQGLSFAFTAVKYIRNNQDLAKNKSGNARPWXXXXXXXXXXXXXXXXXXVNGSGDDSRQRIE
Q9SL95________________IPEIMAAGICTGGILFVLGISGLMQLVFNIIPLSVVRGIQLSQGLAFAMSAVKYIRKEQNFSKSKSVGDRPWLGLDGLVLALVCVLFIVLVNGDGEEEEEEEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain