SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene200872

Length: 226 nt

UniGene Fasta

>sp_v3.0_unigene200872
GACGAGATTACATCCACAAACAGACGAGATTTATGCAATGTTGGAGATGTTGGCTCAGCAGAAGTAGAAGGGGGCAGGGTAGTGTGCCTGATTACTAACTTTGTTTTGCATGATGTGGAGGAGGAGCACAAGGAGCACATGCTCTACCACCACAGTGAACAGCTGGCAATTGCTTTTGGGCTAATCAGCACACCTCCTAGAACAATAATTCGAGTTGTCAAGAACC

Ace file of the UniGene sp_v3.0_unigene200872

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V1_PICAB	-	-	6.0e-14	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Pentatricopeptide repeat protein	-	-	0.0	-

Source	Gene names
Sma3	At1g47580; At2g22070; At4g33170; F16N3.14; F4I10.100; GSVIVT00003060001; GSVIVT00005426001; GSVIVT00011403001; GSVIVT00019419001; GSVIVT00020655001; GSVIVT00021165001; GSVIVT00021586001; GSVIVT00021587001; GSVIVT00030057001; GSVIVT00032298001; GSVIVT00033

Source	GOs	Term	Type	e value	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	0.0	-
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G47580.1	Pentatricopeptide repeat (PPR) superfamily protein chr1:17485668-17486387 FORWARD LENGTH=239	7.0e-15	68%
RefSeq	Arabidopsis thaliana	NP_175189.2	putative lipoyltransferase [Arabidopsis thaliana]	9.0e-15	68%
RefSeq	Populus trichocarpa	XP_002324099.1	predicted protein [Populus trichocarpa]	8.0e-13	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 44 aas, your sequence is shorter than subject: 75 - 370

Fln protein: DEITSTNRRDLCNVGDVGSAEVEGGRVVCLITNFVLHDVEEEHKEHMLYHHSEQLAIAFGLISTPPRTIIRVVKN

Protein Length: 76

Fln nts: GACGAGATTACATCCACAAACAGACGAGATTTATGCAATGTTGGAGATGTTGGCTCAGCAGAAGTAGAAGGGGGCAGGGTAGTGTGCCTGATTACTAACTTTGTTTTGCATGATGTGGAGGAGGAGCACAAGGAGCACATGCTCTACCACCACAGTGAACAGCTGGCAATTGCTTTTGGGCTAATCAGCACACCTCCTAGAACAATAATTCGAGTTGTCAAGAACC

Fln Alignment:

AllPine_b_c43872___TNFVLHDVEEEHKEHMLYHHSEQLAIAFGLISTPPRTIIRVVKN
A9P0W0________________TNFVLHDVEEEQKEWILGHHSEKLAIAFGIISTPPGTTIRVVKN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain