SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene200681

Length: 284 nt

UniGene Fasta

>sp_v3.0_unigene200681
ACATGGTAAAAGCAAAAGCCAACAAAGTAGCGAAGAAGCATCCACGATGCATAGCGGATGGCAACGAACTCCTGCGCTTTCACTGTACAACGCTGGCTTGTTCCTTGGGAATGAATGGGTGTTGTAGCTTATGTAACCAACCTTCCTGCACCATGTGCAATGTCATTACACATGGTTTCTCTTCACCACCACCTACGGAGATGTTGGAGGGCAAGGGCAAGGGCAATGCGTCCGGGATTTACACCACCGCAAGCAGTGGGAAAGCTCATGACCACATTCAGTCG

Ace file of the UniGene sp_v3.0_unigene200681

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	Nucleic acid binding protein, putative	-	-	8.265e-06	-

Source	Gene names
Sma3	At1g75710; GSVIVT00012838001; GSVIVT00014433001; GSVIVT00015331001; GSVIVT00015438001; POPTRDRAFT_1097187; POPTRDRAFT_209759; POPTRDRAFT_410487; POPTRDRAFT_550893; POPTRDRAFT_569056; RCOM_1032360; RCOM_1597570; VITISV_013440; mrpi-2;

Source	GOs	Term	Type	e value	Identity
Sma3	intracellular	GO:0005622	Cellular Component	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017909	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G54630.1	zinc finger protein-related chr5:22192607-22194260 REVERSE LENGTH=472	8.0e-21	48%
RefSeq	Arabidopsis thaliana	NP_200274.1	zinc finger-related protein [Arabidopsis thaliana]	1.0e-20	48%
RefSeq	Populus trichocarpa	XP_002302254.1	predicted protein, partial [Populus trichocarpa]	3.0e-24	57%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC21

Fln msg: Distance to subject end: 70 aas, atg_distance in limit (1-15): atg_distance = 1, your sequence is shorter than subject: 94 - 154

Fln protein: MVKAKANKVAKKHPRCIADGNELLRFHCTTLACSLGMNGCCSLCNQPSCTMCNVITHGFSSPPPTEMLEGKGKGNASGIYTTASSGKAHDHIQS

Protein Length: 95

Fln nts: AC_-_ATGGTAAAAGCAAAAGCCAACAAAGTAGCGAAGAAGCATCCACGATGCATAGCGGATGGCAACGAACTCCTGCGCTTTCACTGTACAACGCTGGCTTGTTCCTTGGGAATGAATGGGTGTTGTAGCTTATGTAACCAACCTTCCTGCACCATGTGCAATGTCATTACACATGGTTTCTCTTCACCACCACCTACGGAGATGTTGGAGGGCAAGGGCAAGGGCAATGCGTCCGGGATTTACACCACCGCAAGCAGTGGGAAAGCTCATGACCACATTCAGTCG

Fln Alignment:

AllPine_b_c43518___HPRCIADGNELLRFHCTTLACSLGMNGCCSLCNQPSCTMCNVITHGFSSPPPTEMLEGKGKGNASGIYTTASSGKAHDHIQ
D5AC21________________HPRCIADGNELLRFHSITFTCSLGMDGLTNLCNFPSCNVCNIIRHGFSSKVE----------NGKGIYTTASSGKAHDSIE

SSRs (tot: 1)

Start position	End position	Sequence	Length
208	226	AGGGCA AGGGCA AGGGCA A	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain