SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene200616

Length: 399 nt

UniGene Fasta

>sp_v3.0_unigene200616
CACCATAGGTGTTCCAGTGAATGGATGGACTGCCATTCGATTTAGAGCTAATAATCCAGGAGTGTGGTTTATGCATTGTCACTTTGATGATCATATGACATGGGGATTGAGTACAGCGTTTCTAGTTAAGAACGGTCGTGGTCACTTGGCAACACTGGAGGCTCCTCCTCCAGACCTTCCCAAGTGTTAGAGAACTAAAATGACATCAACTCGATCATGTTTGGTTAGGCCCATGGTTTCTCAAAAAGATGTTGAGCCGTAGGAATAAAGTACACTTCGTTGTAAAGAGTGAATTGGTGTGATTTGATTATAATGAGCTTAAGGATTTCAATACGTGGTATGAAAGCAACATTAATATATTCATTTTGTTGCATATATTTGTATAAATAAGTTGTTGAA

Ace file of the UniGene sp_v3.0_unigene200616

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Putative laccase-17; AltName: Full=Benzenediol:oxygen oxidoreductase 17; AltName: Full=Diphenol oxidase 17; AltName: Full=Urishiol oxidase 17; Flags: Precursor gb\|ABA91124.1\| laccase, putative [Oryza sativa Japonica Group] gb\|EAZ17158.1\| hyp	-	-	1.0e-21	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Laccase	-	-	9.262e-38	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	0.0	-
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	4.24e-29	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		4.24e-29	%
Sma3	Metabolic pathways	01100		4.24e-29	%

Source	Gene names
Sma3	At2g30210; At2g38080; At2g40370; At2g46570; At3g09220; At5g01190; At5g03260; At5g05390; At5g07130; At5g09360; At5g48100; At5g58910; At5g60020; B1088C09.5; F13A10.10; F15A17_290; F16M14.1; F3L24.9; F7J8.170; GLac1; GLac3; GLac90; GSVIVT00001780001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	secondary cell wall biogenesis	GO:0009834	Biological Process	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G40370.1	LAC5 laccase 5 chr2:16858192-16860593 REVERSE LENGTH=580	2.0e-25	67%
RefSeq	Arabidopsis thaliana	NP_181568.1	laccase 5 [Arabidopsis thaliana]	2.0e-25	67%
RefSeq	Populus trichocarpa	XP_002320207.1	predicted protein [Populus trichocarpa]	6.0e-28	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRA7

Fln msg: your sequence is shorter than subject: 63 - 570

Fln protein: TIGVPVNGWTAIRFRANNPGVWFMHCHFDDHMTWGLSTAFLVKNGRGHLATLEAPPPDLPKC*

Protein Length: 64

Fln nts: CACCATAGGTGTTCCAGTGAATGGATGGACTGCCATTCGATTTAGAGCTAATAATCCAGGAGTGTGGTTTATGCATTGTCACTTTGATGATCATATGACATGGGGATTGAGTACAGCGTTTCTAGTTAAGAACGGTCGTGGTCACTTGGCAACACTGGAGGCTCCTCCTCCAGACCTTCCCAAGTGTTAG___AGAACTAAAATGACATCAACTCGATCATGTTTGGTTAGGCCCATGGTTTCTCAAAAAGATGTTGAGCCGTAGGAATAAAGTACACTTCGTTGTAAAGAGTGAATTGGTGTGATTTGATTATAATGAGCTTAAGGATTTCAATACGTGGTATGAAAGCAACATTAATATATTCATTTTGTTGCATATATTTGTATAAATAAGTTGTTGAA

Fln Alignment:

AllPine_b_c43390___TIGVPVNGWTAIRFRANNPGVWFMHCHFDDHMTWGLSTAFLVKNGRGHLATLEAPPPDLPKC
C0PRA7________________TVIAPVSGWVAIRFKADNPGVWFLHCHLDDHLVWGLNMVFIVKNGHGPLATLEPPPKDLPPC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain