SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene200592

Length: 440 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene200592
GAGAATCATATGACTTATGCTATTTATTTTATTAGCAAAAATCTAACCACTGTAGAATTGAACTACAGAGTAACTGAGAAAGAAATGGTGGCAGTAGTTCATGCTATGAATAAATTTCGACATTACATCATAGATTATGAAGTTTTCATCCATACAGATCATTCTGCCATCAGGTATTTGATGAATAAACCCATTATTAATGGCAGAATAACAAGATGGTTGTTATTGCTGTAGGAATTCAACCTTATTGCCCTAGATAGATATGGAAGGGAAAATCAAGTGGCATATTTTCTATCTCGATTACATACACTTGGTGAGATTGTTCCTATTTCAGATAACTTTCTTGATGAACATTTATTTGCAATATCAATTATAACTCCATGGTAAGCTGATATAGCTAATTATTTATCAACAGAAAAATTACTTCCACATTTTACATC

Ace file of the UniGene sp_v3.0_unigene200592 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR	-	-	1.0e-24	41%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	46%

Source	Gene names
Sma3	GSVIVT00009118001; LOC_Os10g17400; OSJNAa0053D03.14; OSJNBa0004A10.21; SDM1_41t00009; VITISV_002952; VITISV_003071; VITISV_003321; VITISV_006427; VITISV_010027; VITISV_010140; VITISV_010325; VITISV_012504; VITISV_014330; VITISV_014771; VITISV_015140; VITI

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AX19

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 329 aas, your sequence is shorter than subject: 129 - 493

Fln protein: ENHMTYAIYFISKNLTTVELNYRVTEKEMVAVVHAMNKFRHYIIDYEVFIHTDHSAIRYLMNKPIINGRITRWLLLL*EFNLIALDRYGRENQVAYFLSRLHTLGEIVPISDNFLDEHLFAISIITPW*

Protein Length: 130

Fln nts: GAGAATCATATGACTTATGCTATTTATTTTATTAGCAAAAATCTAACCACTGTAGAATTGAACTACAGAGTAACTGAGAAAGAAATGGTGGCAGTAGTTCATGCTATGAATAAATTTCGACATTACATCATAGATTATGAAGTTTTCATCCATACAGATCATTCTGCCATCAGGTATTTGATGAATAAACCCATTATTAATGGCAGAATAACAAGATGGTTGTTATTGCTGTAGGAATTCAACCTTATTGCCCTAGATAGATATGGAAGGGAAAATCAAGTGGCATATTTTCTATCTCGATTACATACACTTGGTGAGATTGTTCCTATTTCAGATAACTTTCTTGATGAACATTTATTTGCAATATCAATTATAACTCCATGGTAAGCTGATATAGCTAATTATTTATCAACAGAAAAATTACTTCCACATTTTACATC

Fln Alignment:

AllPine_b_c43349___ENHMTYAIYFISKNLTTVELNYRVTEKEMVAVVHAMNKFRHYIIDYEVFIHTDHSAIRYLMNKPIINGRITRWXXXX*EFNLIALDRYGRENQVAYFLSRLHTLGEI--VPISDNFLDEHLFAISIITPW*ADIANYL
A5AX19________________EDGKPYVIYYASKTLNEAQRNYTTTEKELLAVVFALDKFRAYLVGSSIVVFIDHSALKYLLTKQDANARLIRWILLLQEFNLQIRDKNGVENVVADHLSRLVIAHDSHGLPINDDFLEESLMSIE-VAPWYSHIANYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain