SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene200415

Length: 467 nt

UniGene Fasta

>sp_v3.0_unigene200415
ATTGGAAATAGCAGGGTAGCTGAACTACCCACTGTGCAACAGTATGTTCAGGTTAAAATAGGTGATTTACTTGTAATAACAAGAGATCCATGCTTGGCACCATCATTAATATCAAATAATGATCTCTCAGGACCTCCAAAGGTAACTTGTTCTTTGGGCCTCCTTTTTAGATTCTGTCAAACCTGGTGAGCCAATTGAGTTTGATGATGGAAAGATTAAAGGGGTGATTCGAGGTGTCAATATTTCAGAGATTTGTGTAGAAATTACACATGCAGGTCAAAATGGATCAAAGCTGGGTGCTGAAAAATCAATTAATGTGCCGAGAAGTAACCTGCATTTTGAAGGGCTCACAGTGAAGGACTTGATGGATCTAGATTTTATTGCTGCCAATGCTAGATTTGGTTGGTGTCTCTTTTGTTAATGATGTCAACGATGTTAATATCCTTCAACAAGAGCTTGATAAGAGG

Ace file of the UniGene sp_v3.0_unigene200415

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pyruvate kinase [Arabidopsis thaliana] emb\|CAB66395.1\| pyruvate kinase-like protein [Arabidopsis thaliana] gb\|AAL59999.1\| putative pyruvate kinase [Arabidopsis thaliana] gb\|AAM20177.1\| putative pyruvate kinase [Arabidopsis thaliana] gb\|AEE78506.1\| pyruvat	-	-	4.0e-32	64%
FL-Next	sp=Plastidial pyruvate kinase 4, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	38%

Source	Gene names
Sma3	At3g49160; F2K15.20; GSVIVT00006511001; PHYPADRAFT_147118; PHYPADRAFT_147287; POPTRDRAFT_422890; RCOM_1579790;

Source	GOs	Term	Type	Identity
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	pyruvate kinase activity	GO:0004743	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pyruvate kinase	IPR001697	-	-
Sma3	Pyruvate kinase, barrel	IPR015793	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49160.1	pyruvate kinase family protein chr3:18222132-18224415 REVERSE LENGTH=710	5.0e-34	64%
RefSeq	Arabidopsis thaliana	NP_190485.1	pyruvate kinase [Arabidopsis thaliana]	6.0e-34	64%
RefSeq	Populus trichocarpa	XP_002318385.1	predicted protein, partial [Populus trichocarpa]	9.0e-38	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M3B6

Fln msg: Separated hits, possible frame ERROR between 168 and 170, and possible frame ERROR between 394 and 396, Distance to subject end: 137 aas, your sequence is shorter than subject: 157 - 710

Fln protein: IGNSRVAELPTVQQYVQVKIGDLLVITRDPCLAPSLISNNDLSGPPKVTCSLGLLxxDSVKPGEPIEFDDGKIKGVIRGVNISEICVEITHAGQNGSKLGAEKSINVPRSNLHFEGLTVKDLMDLDFIAANxLDLVGVSFVNDVNDVNILQQELDKR

Protein Length: 158

Fln nts: ATTGGAAATAGCAGGGTAGCTGAACTACCCACTGTGCAACAGTATGTTCAGGTTAAAATAGGTGATTTACTTGTAATAACAAGAGATCCATGCTTGGCACCATCATTAATATCAAATAATGATCTCTCAGGACCTCCAAAGGTAACTTGTTCTTTGGGCCTCCTTTTxxxAGATTCTGTCAAACCTGGTGAGCCAATTGAGTTTGATGATGGAAAGATTAAAGGGGTGATTCGAGGTGTCAATATTTCAGAGATTTGTGTAGAAATTACACATGCAGGTCAAAATGGATCAAAGCTGGGTGCTGAAAAATCAATTAATGTGCCGAGAAGTAACCTGCATTTTGAAGGGCTCACAGTGAAGGACTTGATGGATCTAGATTTTATTGCTGCCAATxxxCTAGATTTGGTTGGTGTCTCTTTTGTTAATGATGTCAACGATGTTAATATCCTTCAACAAGAGCTTGATAAGAGG

Fln Alignment:

AllPine_b_c43139___RVAELPTVQQYVQVKIGDLLVITRDPCLAPSLISNNDLSGPPKVTCSLGLLFxDSVKPGEPIEFDDGKIKGVIRGVNISEICVEITHAGQNGSKLGAEKSINVPRSNLHFEGLTVKDLMDLDFIAANAxDLVGVSFVNDVNDVNILQQELDKR
Q9M3B6________________RVVDVPPKESFVRLKVGDLLVITREGSLDEPSVT---VPGAHRLTCPSGYLFxDSVKPGETIGFDDGKIWGVIKGTSPSEVIVSITHARPKGTKLGSEKSINIPQSDIHFKGLTSKDIKDLDYVASHAxDMVGISFIRDVHDITVLRQELKKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain