SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene200256

Length: 466 nt

UniGene Fasta

>sp_v3.0_unigene200256
GGGAAAGATCGAGCCCGTAAATTCTAATTTATCTGAACTTGCTGTTATGGCATACGAATATGGCTATAGTATTGATGATCCTCTCACATTGCCCATTTGGGAGGCACAATTTGGTGATTTCAATAATCAAGCTCAAGTAACCATCGACCAGTTTATCTCCAGTTCAGAGTCGAAGTGGTTGCGCCAAACTGGAATGGTATTATTATTGCCACACGGTATGGATGGCGCTGGACCAGAACACTCAAGTTGTAGAATCGAACGATTTTTGCAACTTGTGGACAGTGATTCGATCGATGTAAATTACGACCGCAATATCAACCTCCAGGTGATCAACCCAACAACACCCGGCAATTATTTCCATGCTTTGAGAAGGCAAATGGCTGAAAGTTCCGTAAGCCTCTTGTTGTTATCGCACCAAAGACTTTGTTGAGACTTGGTGAAGCCACTTCAAAACTAGAAGAGTTGG

Ace file of the UniGene sp_v3.0_unigene200256

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Oxoglutarate dehydrogenase n=1 Tax=Polysphondylium pallidum RepID=D3BJ15_POLPA	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein ALNC14_047460; Albugo laibachii Nc14.	-	-	0.0	62%
Sma3	2-oxoglutarate dehydrogenase, putative	-	-	7.399e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxoglutarate dehydrogenase (succinyl-transferring).	EC:1.2.4.2	-	3.176e-23	-

Source	KEGGs	Term	e value	Identity
Sma3	Citrate cycle (TCA cycle)	00020	3.176e-23	%
Sma3	Lysine degradation	00310	3.176e-23	%
Sma3	Tryptophan metabolism	00380	3.176e-23	%
Sma3	Biosynthesis of phenylpropanoids	01061	3.176e-23	%
Sma3	Biosynthesis of terpenoids and steroids	01062	3.176e-23	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	3.176e-23	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	3.176e-23	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	3.176e-23	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	3.176e-23	%
Sma3	Biosynthesis of plant hormones	01070	3.176e-23	%
Sma3	Metabolic pathways	01100	3.176e-23	%
Sma3	Biosynthesis of secondary metabolites	01110	3.176e-23	%

Source	Gene names
Sma3	At3g55410; At5g65750; CHLREDRAFT_79471; F6H11.130; GSVIVT00018534001; MICPUCDRAFT_35900; MICPUN_104793; MICPUN_82522; OGD1; OGDH; OSIGBa0096P03.7; OSTLU_49109; Os04g0390000; Os07g0695800; OsI_15669; OsJ_14584; Ot03g02230; Ot16g00490; P0627E10.28; PHATRDRA

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	nuclease activity	GO:0004518	Molecular Function	-
Sma3	oxoglutarate dehydrogenase (succinyl-transferring) activity	GO:0004591	Molecular Function	-
Sma3	thiamine pyrophosphate binding	GO:0030976	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Excinuclease ABC, C subunit, N-terminal	IPR000305	-	-
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Dehydrogenase, E1 component	IPR001017	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-
Sma3	2-oxoglutarate dehydrogenase, E1 component	IPR011603	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G65750.1	2-oxoglutarate dehydrogenase, E1 component chr5:26304212-26307947 FORWARD LENGTH=1025	8.00141e-43	60%
RefSeq	Arabidopsis thaliana	NP_201376.1	2-oxoglutarate dehydrogenase, E1 component [Arabidopsis thaliana]	1.00053e-42	60%
RefSeq	Populus trichocarpa	XP_002315242.1	predicted protein [Populus trichocarpa]	3.9937e-43	59%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: F0WBS6

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 27 aas, your sequence is shorter than subject: 143 - 274

Fln protein: GKIEPVNSNLSELAVMAYEYGYSIDDPLTLPIWEAQFGDFNNQAQVTIDQFISSSESKWLRQTGMVLLLPHGMDGAGPEHSSCRIERFLQLVDSDSIDVNYDRNINLQVINPTTPGNYFHALRRQMAESSVSLLLLSHQRLC*

Protein Length: 144

Fln nts: GGGAAAGATCGAGCCCGTAAATTCTAATTTATCTGAACTTGCTGTTATGGCATACGAATATGGCTATAGTATTGATGATCCTCTCACATTGCCCATTTGGGAGGCACAATTTGGTGATTTCAATAATCAAGCTCAAGTAACCATCGACCAGTTTATCTCCAGTTCAGAGTCGAAGTGGTTGCGCCAAACTGGAATGGTATTATTATTGCCACACGGTATGGATGGCGCTGGACCAGAACACTCAAGTTGTAGAATCGAACGATTTTTGCAACTTGTGGACAGTGATTCGATCGATGTAAATTACGACCGCAATATCAACCTCCAGGTGATCAACCCAACAACACCCGGCAATTATTTCCATGCTTTGAGAAGGCAAATGGCTGAAAGTTCCGTAAGCCTCTTGTTGTTATCGCACCAAAGACTTTGTTGA___GACTTGGTGAAGCCACTTCAAAACTAGAAGAGTTGG

Fln Alignment:

AllPine_b_c42929___GKIEPVNSNLSELAVMAYEYGYSIDDPLTLPIWEAQFGDFNNQAQVTIDQFISSSESKWLRQTGMVLLLPHGMDGAGPEHSSCRIERFLQLVDSDSIDV----------NYDRNINLQVINPTTPGNYFHALRRQ
F0WBS6________________GKYRVVNSNLSELAVMGFEYGYSWEDPRTLVLWEAQFGDFNNGAQIIIDQFLASGESKWMKQSGLVLLLPHGYDGAGPDHSSGRLERFLQLVDSPALDAVSSKQSIDWKDFTHNSNMIVANLTTPANYYHLLRRQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain