SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene200057

Length: 296 nt

UniGene Fasta

>sp_v3.0_unigene200057
TTGTTTATTGCACAAGTATGGCATCGTCGGAACAAATTGCAGTAGCTTTCGTTAAACACTACTATGAGAAATTCGATAGTAAGGATTGGGGTGCCCTAGTTGGACTTTATCAAGAAACCTCAATGTTATCTTTCGAGGGAGGTTTATTTACTGGACCAAAGGCAATCATTGAAAGACTTCAACAATTACCAAAAGTTGCCCACAGCATTTCAACCCAAGATTGTCAACCTACTCCAGGAGGAGGTTTGGTAGTATTTGTTAGTGGCAAACTATCGATTGATTCTGATAATATTCTC

Ace file of the UniGene sp_v3.0_unigene200057

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nuclear transport factor 2 n=4 Tax=Andropogoneae RepID=B4FC92_MAIZE	-	-	1.0e-15	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%

Source	GOs	Term	Type	e value	Identity
Sma3	intracellular	GO:0005622	Cellular Component	0.0	-
Sma3	transport	GO:0006810	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Nuclear transport factor 2	IPR002075	-	0.0	-
Sma3	Nuclear transport factor 2, Eukaryote	IPR018222	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G27970.2	NTF2B nuclear transport factor 2B chr1:9746921-9748306 FORWARD LENGTH=134	1.0e-19	47%
RefSeq	Arabidopsis thaliana	NP_174118.1	nuclear transport factor 2B [Arabidopsis thaliana]	1.0e-19	47%
RefSeq	Populus trichocarpa	XP_002304677.1	predicted protein [Populus trichocarpa]	1.0e-18	48%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ74

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 93 - 123

Fln protein: MASSEQIAVAFVKHYYEKFDSKDWGALVGLYQETSMLSFEGGLFTGPKAIIERLQQLPKVAHSISTQDCQPTPGGGLVVFVSGKLSIDSDNIL

Protein Length: 94

Fln nts: TTGTTTATTGCACAAGT_-_ATGGCATCGTCGGAACAAATTGCAGTAGCTTTCGTTAAACACTACTATGAGAAATTCGATAGTAAGGATTGGGGTGCCCTAGTTGGACTTTATCAAGAAACCTCAATGTTATCTTTCGAGGGAGGTTTATTTACTGGACCAAAGGCAATCATTGAAAGACTTCAACAATTACCAAAAGTTGCCCACAGCATTTCAACCCAAGATTGTCAACCTACTCCAGGAGGAGGTTTGGTAGTATTTGTTAGTGGCAAACTATCGATTGATTCTGATAATATTCTC

Fln Alignment:

AllPine_b_c42686___IAVAFVKHYYEKFDSKDWGALVGLYQETSMLSFEGGLFTGPKAIIERLQQLP--KVAHSISTQDCQPT-PGGGLVVFVSGKLSI
A9NQ74________________VAKAFVEHYYNTFDASR-ANLVTLYQETSMMTFEGQKHQGPASIVAKLTGLPFQQCKHAISTVDCQPSGPAGGMIVFVSGMLQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain